Experiment: 7H9 with 2-Mercaptopyridine N-oxide 0.0078 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0551c and Rv0552 are separated by 77 nucleotides Rv0552 and Rv0553 overlap by 4 nucleotides Rv0553 and Rv0554 overlap by 4 nucleotides
Rv0551c: Rv0551c - Probable fatty-acid-CoA ligase FadD8 (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase), at 641,096 to 642,811
Rv0551c
Rv0552: Rv0552 - Conserved protein, at 642,889 to 644,493
Rv0552
Rv0553: Rv0553 - Probable muconate cycloisomerase MenC (cis,cis-muconate lactonizing enzyme) (MLE), at 644,490 to 645,470
Rv0553
Rv0554: Rv0554 - Possible peroxidase BpoC (non-haem peroxidase), at 645,467 to 646,255
Rv0554
Position (kb) 642
643
644
645 Strain fitness (log2 ratio) -1
0
1
2 at 642.045 kb on - strand, within Rv0551c at 642.239 kb on + strand, within Rv0551c at 642.239 kb on + strand, within Rv0551c at 642.397 kb on - strand, within Rv0551c at 642.556 kb on - strand, within Rv0551c at 642.565 kb on + strand, within Rv0551c at 642.779 kb on + strand at 642.779 kb on + strand at 642.823 kb on - strand at 642.823 kb on - strand at 643.342 kb on + strand, within Rv0552 at 643.411 kb on + strand, within Rv0552 at 643.411 kb on + strand, within Rv0552 at 643.487 kb on + strand, within Rv0552 at 643.837 kb on + strand, within Rv0552 at 643.945 kb on + strand, within Rv0552 at 643.945 kb on + strand, within Rv0552 at 644.083 kb on + strand, within Rv0552 at 644.083 kb on + strand, within Rv0552 at 644.175 kb on + strand, within Rv0552 at 644.175 kb on + strand, within Rv0552 at 644.389 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with 2-Mercaptopyridine N-oxide 0.0078 mM remove 642,045 - Rv0551c 0.55 +0.4 642,239 + Rv0551c 0.67 +0.1 642,239 + Rv0551c 0.67 +1.8 642,397 - Rv0551c 0.76 -0.7 642,556 - Rv0551c 0.85 -0.7 642,565 + Rv0551c 0.86 -0.3 642,779 + +0.1 642,779 + +1.9 642,823 - -0.0 642,823 - -0.7 643,342 + Rv0552 0.28 +1.9 643,411 + Rv0552 0.33 -0.8 643,411 + Rv0552 0.33 -1.2 643,487 + Rv0552 0.37 -0.6 643,837 + Rv0552 0.59 -1.3 643,945 + Rv0552 0.66 -0.8 643,945 + Rv0552 0.66 -0.3 644,083 + Rv0552 0.74 -0.4 644,083 + Rv0552 0.74 +0.2 644,175 + Rv0552 0.80 -0.4 644,175 + Rv0552 0.80 -1.0 644,389 - -0.2
Or see this region's nucleotide sequence