Experiment: 7H9 with 2-bromo-2-nitro-1,3-propanediol 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0842 and Rv0843 overlap by 17 nucleotides Rv0843 and Rv0844c are separated by 63 nucleotides Rv0844c and Rv0845 are separated by 83 nucleotides
Rv0842: Rv0842 - Probable conserved integral membrane protein, at 938,112 to 939,404
Rv0842
Rv0843: Rv0843 - Probable dehydrogenase, at 939,388 to 940,392
Rv0843
Rv0844c: Rv0844c - Possible nitrate/nitrite response transcriptional regulatory protein NarL, at 940,456 to 941,106
Rv0844c
Rv0845: Rv0845 - Possible two component sensor kinase, at 941,190 to 942,467
Rv0845
Position (kb) 939
940
941 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 938.431 kb on + strand, within Rv0842 at 938.432 kb on - strand, within Rv0842 at 938.705 kb on + strand, within Rv0842 at 938.706 kb on - strand, within Rv0842 at 938.706 kb on - strand, within Rv0842 at 938.707 kb on + strand, within Rv0842 at 938.708 kb on - strand, within Rv0842 at 938.726 kb on + strand, within Rv0842 at 938.727 kb on - strand, within Rv0842 at 939.044 kb on + strand, within Rv0842 at 939.396 kb on + strand at 939.397 kb on - strand at 939.445 kb on + strand at 939.478 kb on - strand at 939.552 kb on - strand, within Rv0843 at 939.552 kb on - strand, within Rv0843 at 939.630 kb on + strand, within Rv0843 at 939.690 kb on - strand, within Rv0843 at 939.690 kb on - strand, within Rv0843 at 939.944 kb on + strand, within Rv0843 at 939.945 kb on - strand, within Rv0843 at 939.965 kb on - strand, within Rv0843 at 939.965 kb on - strand, within Rv0843 at 939.985 kb on + strand, within Rv0843 at 939.986 kb on - strand, within Rv0843 at 940.123 kb on + strand, within Rv0843 at 940.397 kb on + strand at 940.397 kb on + strand at 940.398 kb on - strand at 940.398 kb on - strand at 940.398 kb on - strand at 940.403 kb on + strand at 940.403 kb on + strand at 940.403 kb on + strand at 940.404 kb on - strand at 940.404 kb on - strand at 940.404 kb on - strand at 940.404 kb on - strand at 940.404 kb on - strand at 940.430 kb on + strand at 940.430 kb on + strand at 940.430 kb on + strand at 940.431 kb on - strand at 940.431 kb on - strand at 940.457 kb on + strand at 940.526 kb on + strand, within Rv0844c at 940.568 kb on + strand, within Rv0844c at 940.568 kb on + strand, within Rv0844c at 940.568 kb on + strand, within Rv0844c at 940.568 kb on + strand, within Rv0844c at 940.569 kb on - strand, within Rv0844c at 940.569 kb on - strand, within Rv0844c at 940.569 kb on - strand, within Rv0844c at 940.569 kb on - strand, within Rv0844c at 940.569 kb on - strand, within Rv0844c at 940.569 kb on - strand, within Rv0844c at 940.569 kb on - strand, within Rv0844c at 940.569 kb on - strand, within Rv0844c at 940.569 kb on - strand, within Rv0844c at 940.569 kb on - strand, within Rv0844c at 940.570 kb on + strand, within Rv0844c at 940.570 kb on + strand, within Rv0844c at 940.571 kb on - strand, within Rv0844c at 940.814 kb on + strand, within Rv0844c at 940.846 kb on - strand, within Rv0844c at 940.846 kb on - strand, within Rv0844c at 940.871 kb on + strand, within Rv0844c at 940.872 kb on - strand, within Rv0844c at 941.133 kb on - strand at 941.235 kb on + strand at 941.235 kb on + strand at 941.236 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with 2-bromo-2-nitro-1,3-propanediol 0.1 mM remove 938,431 + Rv0842 0.25 -0.6 938,432 - Rv0842 0.25 +2.9 938,705 + Rv0842 0.46 -0.9 938,706 - Rv0842 0.46 -0.2 938,706 - Rv0842 0.46 -2.8 938,707 + Rv0842 0.46 -0.4 938,708 - Rv0842 0.46 +0.5 938,726 + Rv0842 0.47 -0.8 938,727 - Rv0842 0.48 -0.1 939,044 + Rv0842 0.72 -0.5 939,396 + +1.4 939,397 - +1.8 939,445 + -0.1 939,478 - -0.7 939,552 - Rv0843 0.16 -0.4 939,552 - Rv0843 0.16 -0.4 939,630 + Rv0843 0.24 -0.7 939,690 - Rv0843 0.30 +0.4 939,690 - Rv0843 0.30 -0.9 939,944 + Rv0843 0.55 -0.5 939,945 - Rv0843 0.55 -0.7 939,965 - Rv0843 0.57 -1.6 939,965 - Rv0843 0.57 -0.1 939,985 + Rv0843 0.59 -0.4 939,986 - Rv0843 0.60 -1.2 940,123 + Rv0843 0.73 -2.3 940,397 + -0.2 940,397 + -0.6 940,398 - +0.2 940,398 - +2.1 940,398 - -0.1 940,403 + -0.9 940,403 + +2.2 940,403 + -1.0 940,404 - -0.3 940,404 - -0.1 940,404 - +0.0 940,404 - -0.4 940,404 - -1.4 940,430 + -0.5 940,430 + -0.2 940,430 + -0.0 940,431 - -0.0 940,431 - -0.2 940,457 + -0.3 940,526 + Rv0844c 0.11 -0.4 940,568 + Rv0844c 0.17 -0.4 940,568 + Rv0844c 0.17 -0.2 940,568 + Rv0844c 0.17 +0.5 940,568 + Rv0844c 0.17 +0.3 940,569 - Rv0844c 0.17 +0.2 940,569 - Rv0844c 0.17 +1.0 940,569 - Rv0844c 0.17 -1.8 940,569 - Rv0844c 0.17 +0.4 940,569 - Rv0844c 0.17 -1.5 940,569 - Rv0844c 0.17 +0.8 940,569 - Rv0844c 0.17 -0.4 940,569 - Rv0844c 0.17 -0.8 940,569 - Rv0844c 0.17 -0.0 940,569 - Rv0844c 0.17 +0.3 940,570 + Rv0844c 0.18 -0.8 940,570 + Rv0844c 0.18 -0.1 940,571 - Rv0844c 0.18 -0.2 940,814 + Rv0844c 0.55 -1.4 940,846 - Rv0844c 0.60 -0.2 940,846 - Rv0844c 0.60 -0.6 940,871 + Rv0844c 0.64 -0.7 940,872 - Rv0844c 0.64 -0.1 941,133 - +1.6 941,235 + +1.5 941,235 + -0.0 941,236 - -0.4
Or see this region's nucleotide sequence