Experiment: 7H9 with 2-bromo-2-nitro-1,3-propanediol 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0622 and Rv0623 are separated by 92 nucleotides Rv0623 and Rv0624 overlap by 1 nucleotides Rv0624 and Rv0625c are separated by 93 nucleotides Rv0625c and Rv0626 are separated by 131 nucleotides Rv0626 and Rv0627 overlap by 4 nucleotides Rv0627 and Rv0628c are separated by 71 nucleotides
Rv0622: Rv0622 - Possible membrane protein, at 715,370 to 716,317
Rv0622
Rv0623: Rv0623 - Possible antitoxin VapB30, at 716,410 to 716,664
Rv0623
Rv0624: Rv0624 - Possible toxin VapC30. Contains PIN domain., at 716,664 to 717,059
Rv0624
Rv0625c: Rv0625c - Probable conserved transmembrane protein, at 717,153 to 717,893
Rv0625c
Rv0626: Rv0626 - Possible antitoxin VapB5, at 718,025 to 718,285
Rv0626
Rv0627: Rv0627 - Possible toxin VapC5, at 718,282 to 718,689
Rv0627
Rv0628c: Rv0628c - Conserved hypothetical protein, at 718,761 to 719,912
Rv0628c
Position (kb) 717
718 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 716.231 kb on + strand at 716.232 kb on - strand at 716.422 kb on - strand at 716.422 kb on - strand at 716.638 kb on + strand, within Rv0623 at 716.639 kb on - strand at 716.797 kb on + strand, within Rv0624 at 716.798 kb on - strand, within Rv0624 at 716.919 kb on + strand, within Rv0624 at 716.920 kb on - strand, within Rv0624 at 716.952 kb on + strand, within Rv0624 at 716.953 kb on - strand, within Rv0624 at 716.970 kb on + strand, within Rv0624 at 716.971 kb on - strand, within Rv0624 at 717.057 kb on + strand at 717.058 kb on - strand at 717.058 kb on - strand at 717.064 kb on + strand at 717.428 kb on - strand, within Rv0625c at 717.428 kb on - strand, within Rv0625c at 717.718 kb on + strand, within Rv0625c at 717.719 kb on - strand, within Rv0625c at 717.719 kb on - strand, within Rv0625c at 717.802 kb on + strand, within Rv0625c at 717.803 kb on - strand, within Rv0625c at 717.803 kb on - strand, within Rv0625c at 717.813 kb on + strand, within Rv0625c at 717.813 kb on + strand, within Rv0625c at 718.001 kb on + strand at 718.020 kb on + strand at 718.054 kb on + strand, within Rv0626
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with 2-bromo-2-nitro-1,3-propanediol 0.1 mM remove 716,231 + +1.6 716,232 - -0.0 716,422 - -0.3 716,422 - -1.1 716,638 + Rv0623 0.89 -0.6 716,639 - +0.1 716,797 + Rv0624 0.34 -0.8 716,798 - Rv0624 0.34 -0.1 716,919 + Rv0624 0.64 -2.9 716,920 - Rv0624 0.65 -0.5 716,952 + Rv0624 0.73 -0.9 716,953 - Rv0624 0.73 -0.3 716,970 + Rv0624 0.77 -0.3 716,971 - Rv0624 0.78 +0.4 717,057 + -0.7 717,058 - -3.5 717,058 - -0.0 717,064 + +0.5 717,428 - Rv0625c 0.37 -0.2 717,428 - Rv0625c 0.37 -0.7 717,718 + Rv0625c 0.76 -0.4 717,719 - Rv0625c 0.76 -1.1 717,719 - Rv0625c 0.76 -0.3 717,802 + Rv0625c 0.88 -0.6 717,803 - Rv0625c 0.88 -1.8 717,803 - Rv0625c 0.88 -0.9 717,813 + Rv0625c 0.89 -0.4 717,813 + Rv0625c 0.89 -1.4 718,001 + -1.2 718,020 + +0.5 718,054 + Rv0626 0.11 +0.2
Or see this region's nucleotide sequence