Experiment: 7H9 with 2-bromo-2-nitro-1,3-propanediol 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0205 and Rv0206c overlap by 4 nucleotides Rv0206c and Rv0207c are separated by 65 nucleotides Rv0207c and Rv0208c are separated by 2 nucleotides
Rv0205: Rv0205 - Probable conserved transmembrane protein, at 243,384 to 244,487
Rv0205
Rv0206c: Rv0206c - Possible conserved transmembrane transport protein MmpL3, at 244,484 to 247,318
Rv0206c
Rv0207c: Rv0207c - Conserved hypothetical protein, at 247,384 to 248,112
Rv0207c
Rv0208c: Rv0208c - Hypothetical methlytransferase (methylase), at 248,115 to 248,906
Rv0208c
Position (kb) 244
245
246
247
248 Strain fitness (log2 ratio) -2
-1
0
1 at 243.866 kb on + strand, within Rv0205 at 243.867 kb on - strand, within Rv0205 at 243.895 kb on + strand, within Rv0205 at 243.895 kb on + strand, within Rv0205 at 243.921 kb on + strand, within Rv0205 at 243.945 kb on + strand, within Rv0205 at 243.945 kb on + strand, within Rv0205 at 243.946 kb on - strand, within Rv0205 at 243.946 kb on - strand, within Rv0205 at 244.485 kb on + strand at 244.486 kb on - strand at 244.623 kb on - strand at 244.623 kb on - strand at 247.723 kb on + strand, within Rv0207c at 247.724 kb on - strand, within Rv0207c at 247.724 kb on - strand, within Rv0207c at 248.053 kb on + strand at 248.120 kb on + strand at 248.206 kb on + strand, within Rv0208c at 248.206 kb on + strand, within Rv0208c at 248.311 kb on + strand, within Rv0208c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with 2-bromo-2-nitro-1,3-propanediol 0.1 mM remove 243,866 + Rv0205 0.44 -0.5 243,867 - Rv0205 0.44 +0.5 243,895 + Rv0205 0.46 +0.3 243,895 + Rv0205 0.46 +0.2 243,921 + Rv0205 0.49 -1.4 243,945 + Rv0205 0.51 +0.0 243,945 + Rv0205 0.51 -0.1 243,946 - Rv0205 0.51 -1.4 243,946 - Rv0205 0.51 -0.3 244,485 + +0.0 244,486 - -0.6 244,623 - -0.3 244,623 - -2.2 247,723 + Rv0207c 0.47 -0.6 247,724 - Rv0207c 0.47 -1.5 247,724 - Rv0207c 0.47 -0.4 248,053 + +0.2 248,120 + +0.3 248,206 + Rv0208c 0.11 +0.0 248,206 + Rv0208c 0.11 -0.6 248,311 + Rv0208c 0.25 -0.9
Or see this region's nucleotide sequence