Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0769 and Rv0770 are separated by 97 nucleotides Rv0770 and Rv0771 overlap by 4 nucleotides Rv0771 and Rv0772 are separated by 11 nucleotides
Rv0769: Rv0769 - Probable dehydrogenase/reductase, at 862,412 to 863,158
Rv0769
Rv0770: Rv0770 - Probable dehydrogenase/reductase, at 863,256 to 864,143
Rv0770
Rv0771: Rv0771 - Possible 4-carboxymuconolactone decarboxylase (CMD), at 864,140 to 864,574
Rv0771
Rv0772: Rv0772 - Probable phosphoribosylamine--glycine ligase PurD (GARS) (glycinamide ribonucleotide synthetase) (phosphoribosylglycinamide synthetase) (5'-phosphoribosylglycinamide synthetase), at 864,586 to 865,854
Rv0772
Position (kb) 864
865 Strain fitness (log2 ratio) -1
0
1 at 863.289 kb on + strand at 863.291 kb on + strand at 863.291 kb on + strand at 864.246 kb on + strand, within Rv0771 at 864.247 kb on - strand, within Rv0771 at 864.370 kb on + strand, within Rv0771 at 864.387 kb on + strand, within Rv0771 at 864.388 kb on - strand, within Rv0771 at 864.388 kb on - strand, within Rv0771 at 864.573 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 863,289 + -0.4 863,291 + -0.9 863,291 + -0.6 864,246 + Rv0771 0.24 +0.8 864,247 - Rv0771 0.25 -0.5 864,370 + Rv0771 0.53 +0.5 864,387 + Rv0771 0.57 -0.3 864,388 - Rv0771 0.57 +0.2 864,388 - Rv0771 0.57 +0.9 864,573 - -0.1
Or see this region's nucleotide sequence