Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1123c

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv1122 and Rv1123c overlap by 8 nucleotidesRv1123c and Rv1124 are separated by 74 nucleotides Rv1122: Rv1122 - Probable 6-phosphogluconate dehydrogenase,decarboxylating Gnd2, at 1,245,129 to 1,246,151 Rv1122 Rv1123c: Rv1123c - Possible peroxidase BpoB (non-haem peroxidase), at 1,246,144 to 1,247,052 Rv1123c Rv1124: Rv1124 - Probable epoxide hydrolase EphC (epoxide hydratase), at 1,247,127 to 1,248,077 Rv1124 Position (kb) 1246 1247 1248Strain fitness (log2 ratio) -2 -1 0 1at 1246.150 kb on - strandat 1246.150 kb on - strandat 1246.730 kb on - strand, within Rv1123cat 1246.760 kb on + strand, within Rv1123cat 1246.953 kb on + strand, within Rv1123cat 1246.954 kb on - strand, within Rv1123cat 1247.024 kb on - strandat 1247.088 kb on - strandat 1247.394 kb on + strand, within Rv1124at 1247.395 kb on - strand, within Rv1124at 1247.656 kb on - strand, within Rv1124at 1247.656 kb on - strand, within Rv1124

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,246,150 - -0.5
1,246,150 - -0.3
1,246,730 - Rv1123c 0.64 +0.5
1,246,760 + Rv1123c 0.68 +0.6
1,246,953 + Rv1123c 0.89 +0.8
1,246,954 - Rv1123c 0.89 +1.3
1,247,024 - -0.1
1,247,088 - -0.7
1,247,394 + Rv1124 0.28 -0.4
1,247,395 - Rv1124 0.28 +0.5
1,247,656 - Rv1124 0.56 -0.2
1,247,656 - Rv1124 0.56 -2.3

Or see this region's nucleotide sequence