Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0161 and Rv0162c are separated by 27 nucleotides Rv0162c and Rv0163 overlap by 19 nucleotides Rv0163 and Rv0164 are separated by 53 nucleotides
Rv0161: Rv0161 - Possible oxidoreductase, at 190,607 to 191,956
Rv0161
Rv0162c: Rv0162c - Probable zinc-type alcohol dehydrogenase (E subunit) AdhE1, at 191,984 to 193,135
Rv0162c
Rv0163: Rv0163 - Conserved protein, at 193,117 to 193,572
Rv0163
Rv0164: Rv0164 - Conserved protein TB18.5, at 193,626 to 194,111
Rv0164
Position (kb) 191
192
193
194 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 191.367 kb on + strand, within Rv0161 at 191.576 kb on + strand, within Rv0161 at 191.853 kb on - strand at 191.932 kb on + strand at 191.933 kb on - strand at 191.985 kb on + strand at 192.058 kb on + strand at 192.168 kb on + strand, within Rv0162c at 192.373 kb on - strand, within Rv0162c at 192.373 kb on - strand, within Rv0162c at 192.454 kb on - strand, within Rv0162c at 192.454 kb on - strand, within Rv0162c at 192.582 kb on - strand, within Rv0162c at 192.682 kb on - strand, within Rv0162c at 192.682 kb on - strand, within Rv0162c at 192.682 kb on - strand, within Rv0162c at 193.076 kb on + strand at 193.111 kb on - strand at 193.232 kb on - strand, within Rv0163 at 193.235 kb on - strand, within Rv0163 at 193.340 kb on - strand, within Rv0163 at 193.371 kb on - strand, within Rv0163 at 193.371 kb on - strand, within Rv0163 at 193.371 kb on - strand, within Rv0163 at 193.371 kb on - strand, within Rv0163 at 193.418 kb on - strand, within Rv0163 at 193.489 kb on + strand, within Rv0163 at 193.489 kb on + strand, within Rv0163 at 193.489 kb on + strand, within Rv0163 at 193.490 kb on - strand, within Rv0163 at 193.659 kb on + strand at 193.660 kb on - strand at 193.660 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 191,367 + Rv0161 0.56 +0.2 191,576 + Rv0161 0.72 -0.1 191,853 - -0.5 191,932 + -0.3 191,933 - -0.3 191,985 + -0.6 192,058 + -0.5 192,168 + Rv0162c 0.16 +0.0 192,373 - Rv0162c 0.34 -1.4 192,373 - Rv0162c 0.34 -0.2 192,454 - Rv0162c 0.41 -0.3 192,454 - Rv0162c 0.41 +0.8 192,582 - Rv0162c 0.52 -0.1 192,682 - Rv0162c 0.61 -0.5 192,682 - Rv0162c 0.61 +2.3 192,682 - Rv0162c 0.61 -1.4 193,076 + -0.1 193,111 - +0.1 193,232 - Rv0163 0.25 -1.0 193,235 - Rv0163 0.26 -0.3 193,340 - Rv0163 0.49 -0.2 193,371 - Rv0163 0.56 -0.0 193,371 - Rv0163 0.56 -0.0 193,371 - Rv0163 0.56 +1.0 193,371 - Rv0163 0.56 -0.1 193,418 - Rv0163 0.66 +3.0 193,489 + Rv0163 0.82 -0.6 193,489 + Rv0163 0.82 -0.3 193,489 + Rv0163 0.82 +4.0 193,490 - Rv0163 0.82 +0.6 193,659 + -0.4 193,660 - +1.4 193,660 - +0.9
Or see this region's nucleotide sequence