Experiment: 7H9 with Spectinomycin 0.029 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0211 and Rv0212c are separated by 66 nucleotides Rv0212c and Rv0213c overlap by 4 nucleotides
Rv0211: Rv0211 - Probable iron-regulated phosphoenolpyruvate carboxykinase [GTP] PckA (phosphoenolpyruvate carboxylase) (PEPCK)(pep carboxykinase), at 251,782 to 253,602
Rv0211
Rv0212c: Rv0212c - Possible transcriptional regulatory protein NadR (probably AsnC-family), at 253,669 to 254,640
Rv0212c
Rv0213c: Rv0213c - Possible methyltransferase (methylase), at 254,637 to 255,950
Rv0213c
Position (kb) 253
254
255 Strain fitness (log2 ratio) -1
0
1
2 at 253.617 kb on + strand at 253.617 kb on + strand at 253.618 kb on - strand at 253.618 kb on - strand at 253.618 kb on - strand at 253.891 kb on + strand, within Rv0212c at 253.892 kb on - strand, within Rv0212c at 253.892 kb on - strand, within Rv0212c at 254.051 kb on - strand, within Rv0212c at 254.334 kb on - strand, within Rv0212c at 254.585 kb on + strand at 254.755 kb on - strand at 254.854 kb on + strand, within Rv0213c at 254.854 kb on + strand, within Rv0213c at 254.854 kb on + strand, within Rv0213c at 254.854 kb on + strand, within Rv0213c at 254.910 kb on - strand, within Rv0213c at 254.910 kb on - strand, within Rv0213c at 254.911 kb on + strand, within Rv0213c at 254.978 kb on + strand, within Rv0213c at 254.978 kb on + strand, within Rv0213c at 254.979 kb on - strand, within Rv0213c at 255.089 kb on - strand, within Rv0213c at 255.272 kb on + strand, within Rv0213c at 255.273 kb on - strand, within Rv0213c at 255.295 kb on - strand, within Rv0213c at 255.311 kb on - strand, within Rv0213c at 255.381 kb on + strand, within Rv0213c at 255.381 kb on + strand, within Rv0213c at 255.429 kb on - strand, within Rv0213c at 255.573 kb on + strand, within Rv0213c at 255.573 kb on + strand, within Rv0213c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Spectinomycin 0.029 mM remove 253,617 + -1.0 253,617 + -0.9 253,618 - -0.1 253,618 - -0.3 253,618 - +1.2 253,891 + Rv0212c 0.23 -0.2 253,892 - Rv0212c 0.23 -0.4 253,892 - Rv0212c 0.23 -0.3 254,051 - Rv0212c 0.39 -0.1 254,334 - Rv0212c 0.68 +1.5 254,585 + +0.1 254,755 - +0.9 254,854 + Rv0213c 0.17 -0.0 254,854 + Rv0213c 0.17 -0.7 254,854 + Rv0213c 0.17 +0.9 254,854 + Rv0213c 0.17 +1.9 254,910 - Rv0213c 0.21 -0.8 254,910 - Rv0213c 0.21 +0.4 254,911 + Rv0213c 0.21 +0.6 254,978 + Rv0213c 0.26 +0.4 254,978 + Rv0213c 0.26 -0.0 254,979 - Rv0213c 0.26 +0.5 255,089 - Rv0213c 0.34 +0.2 255,272 + Rv0213c 0.48 +1.5 255,273 - Rv0213c 0.48 -0.1 255,295 - Rv0213c 0.50 -0.4 255,311 - Rv0213c 0.51 -0.5 255,381 + Rv0213c 0.57 -1.0 255,381 + Rv0213c 0.57 -0.3 255,429 - Rv0213c 0.60 +1.9 255,573 + Rv0213c 0.71 -0.6 255,573 + Rv0213c 0.71 -0.1
Or see this region's nucleotide sequence