Experiment: 7H9 with Spectinomycin 0.029 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0076c and Rv0077c are separated by 63 nucleotides Rv0077c and Rv0078 are separated by 61 nucleotides Rv0078 and Rv0078A are separated by 74 nucleotides Rv0078A and Rv0078B overlap by 4 nucleotides
Rv0076c: Rv0076c - Probable membrane protein, at 85,183 to 85,572
Rv0076c
Rv0077c: Rv0077c - Probable oxidoreductase, at 85,636 to 86,466
Rv0077c
Rv0078: Rv0078 - Probable transcriptional regulatory protein, at 86,528 to 87,133
Rv0078
Rv0078A: Rv0078A - Hypothetical protein, at 87,208 to 87,801
Rv0078A
Rv0078B: Rv0078B - Conserved protein, at 87,798 to 88,004
Rv0078B
Position (kb) 86
87
88 Strain fitness (log2 ratio) -2
-1
0
1 at 85.576 kb on - strand at 85.576 kb on - strand at 85.721 kb on - strand, within Rv0077c at 86.104 kb on - strand, within Rv0077c at 86.359 kb on + strand, within Rv0077c at 86.359 kb on + strand, within Rv0077c at 86.360 kb on - strand, within Rv0077c at 86.378 kb on + strand, within Rv0077c at 86.430 kb on - strand at 86.436 kb on + strand at 86.448 kb on + strand at 86.528 kb on - strand at 86.682 kb on - strand, within Rv0078 at 86.836 kb on - strand, within Rv0078 at 86.925 kb on - strand, within Rv0078 at 87.125 kb on - strand at 87.276 kb on + strand, within Rv0078A at 87.289 kb on - strand, within Rv0078A at 87.343 kb on + strand, within Rv0078A at 87.605 kb on + strand, within Rv0078A at 87.606 kb on - strand, within Rv0078A at 87.632 kb on - strand, within Rv0078A at 87.955 kb on + strand, within Rv0078B at 87.955 kb on + strand, within Rv0078B at 87.955 kb on + strand, within Rv0078B at 87.955 kb on + strand, within Rv0078B at 87.955 kb on + strand, within Rv0078B
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Spectinomycin 0.029 mM remove 85,576 - -0.1 85,576 - -0.1 85,721 - Rv0077c 0.10 +1.4 86,104 - Rv0077c 0.56 +0.5 86,359 + Rv0077c 0.87 +0.6 86,359 + Rv0077c 0.87 +0.1 86,360 - Rv0077c 0.87 -0.6 86,378 + Rv0077c 0.89 +0.1 86,430 - -0.0 86,436 + +1.2 86,448 + -0.3 86,528 - -1.0 86,682 - Rv0078 0.25 -1.8 86,836 - Rv0078 0.51 -2.3 86,925 - Rv0078 0.66 -0.9 87,125 - -0.5 87,276 + Rv0078A 0.11 +0.1 87,289 - Rv0078A 0.14 -1.7 87,343 + Rv0078A 0.23 -0.7 87,605 + Rv0078A 0.67 -0.4 87,606 - Rv0078A 0.67 -0.3 87,632 - Rv0078A 0.71 -0.9 87,955 + Rv0078B 0.76 -0.5 87,955 + Rv0078B 0.76 +0.5 87,955 + Rv0078B 0.76 -0.7 87,955 + Rv0078B 0.76 -1.0 87,955 + Rv0078B 0.76 -0.3
Or see this region's nucleotide sequence