Experiment: 7H9 with Ciprofloxacin Hydrochloride 0.0012 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0020c and GFF23 are separated by 199 nucleotides GFF23 and Rv0021c are separated by 186 nucleotides Rv0021c and Rv0022c are separated by 141 nucleotides Rv0022c and Rv0023 are separated by 152 nucleotides
Rv0020c: Rv0020c - Conserved protein with FHA domain, FhaA, at 23,861 to 25,444
Rv0020c
GFF23 - tRNA-Leu, at 25,644 to 25,726
GFF23
Rv0021c: Rv0021c - Conserved hypothetical protein, at 25,913 to 26,881
Rv0021c
Rv0022c: Rv0022c - Probable transcriptional regulatory protein WhiB-like WhiB5, at 27,023 to 27,442
Rv0022c
Rv0023: Rv0023 - Possible transcriptional regulatory protein, at 27,595 to 28,365
Rv0023
Position (kb) 25
26
27 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 24.987 kb on - strand, within Rv0020c at 24.987 kb on - strand, within Rv0020c at 25.143 kb on + strand, within Rv0020c at 25.170 kb on + strand, within Rv0020c at 25.171 kb on - strand, within Rv0020c at 25.171 kb on - strand, within Rv0020c at 25.260 kb on + strand, within Rv0020c at 25.261 kb on - strand, within Rv0020c at 25.261 kb on - strand, within Rv0020c at 25.261 kb on - strand, within Rv0020c at 25.261 kb on - strand, within Rv0020c at 25.505 kb on + strand at 25.505 kb on + strand at 25.506 kb on - strand at 25.506 kb on - strand at 25.616 kb on + strand at 25.616 kb on + strand at 25.616 kb on + strand at 25.616 kb on + strand at 25.616 kb on + strand at 25.617 kb on - strand at 25.617 kb on - strand at 25.624 kb on + strand at 25.730 kb on + strand at 25.730 kb on + strand at 25.731 kb on - strand at 25.796 kb on + strand at 25.907 kb on - strand at 25.914 kb on + strand at 25.915 kb on - strand at 25.915 kb on - strand at 25.915 kb on - strand at 25.915 kb on - strand at 25.960 kb on + strand at 26.040 kb on + strand, within Rv0021c at 26.040 kb on + strand, within Rv0021c at 26.040 kb on + strand, within Rv0021c at 26.041 kb on - strand, within Rv0021c at 26.041 kb on - strand, within Rv0021c at 26.068 kb on - strand, within Rv0021c at 26.141 kb on + strand, within Rv0021c at 26.141 kb on + strand, within Rv0021c at 26.142 kb on - strand, within Rv0021c at 26.193 kb on + strand, within Rv0021c at 26.193 kb on + strand, within Rv0021c at 26.197 kb on + strand, within Rv0021c at 26.197 kb on + strand, within Rv0021c at 26.197 kb on + strand, within Rv0021c at 26.197 kb on + strand, within Rv0021c at 26.197 kb on + strand, within Rv0021c at 26.198 kb on - strand, within Rv0021c at 26.291 kb on - strand, within Rv0021c at 26.622 kb on + strand, within Rv0021c at 26.623 kb on - strand, within Rv0021c at 26.623 kb on - strand, within Rv0021c at 26.623 kb on - strand, within Rv0021c at 26.780 kb on + strand, within Rv0021c at 26.861 kb on - strand at 26.933 kb on - strand at 26.933 kb on - strand at 26.933 kb on - strand at 27.214 kb on - strand, within Rv0022c at 27.245 kb on + strand, within Rv0022c at 27.253 kb on - strand, within Rv0022c at 27.253 kb on - strand, within Rv0022c at 27.299 kb on + strand, within Rv0022c at 27.300 kb on - strand, within Rv0022c at 27.410 kb on + strand at 27.410 kb on + strand at 27.410 kb on + strand at 27.411 kb on - strand at 27.411 kb on - strand at 27.411 kb on - strand at 27.411 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ciprofloxacin Hydrochloride 0.0012 mM remove 24,987 - Rv0020c 0.71 -0.6 24,987 - Rv0020c 0.71 -0.7 25,143 + Rv0020c 0.81 -0.5 25,170 + Rv0020c 0.83 +0.3 25,171 - Rv0020c 0.83 -0.6 25,171 - Rv0020c 0.83 -0.3 25,260 + Rv0020c 0.88 -1.0 25,261 - Rv0020c 0.88 -1.1 25,261 - Rv0020c 0.88 -0.4 25,261 - Rv0020c 0.88 +0.2 25,261 - Rv0020c 0.88 +1.4 25,505 + -1.8 25,505 + -0.7 25,506 - -0.1 25,506 - -0.8 25,616 + +0.3 25,616 + -0.2 25,616 + +1.2 25,616 + +0.3 25,616 + -0.1 25,617 - -0.1 25,617 - -0.9 25,624 + +1.4 25,730 + -0.4 25,730 + +0.5 25,731 - -1.1 25,796 + +0.3 25,907 - -0.8 25,914 + -1.1 25,915 - -0.1 25,915 - -0.6 25,915 - +0.3 25,915 - -0.1 25,960 + -1.1 26,040 + Rv0021c 0.13 +2.9 26,040 + Rv0021c 0.13 -0.2 26,040 + Rv0021c 0.13 +1.4 26,041 - Rv0021c 0.13 -0.3 26,041 - Rv0021c 0.13 -0.1 26,068 - Rv0021c 0.16 +0.5 26,141 + Rv0021c 0.24 +0.0 26,141 + Rv0021c 0.24 -0.0 26,142 - Rv0021c 0.24 +1.3 26,193 + Rv0021c 0.29 -0.3 26,193 + Rv0021c 0.29 -0.7 26,197 + Rv0021c 0.29 -0.8 26,197 + Rv0021c 0.29 +0.1 26,197 + Rv0021c 0.29 -0.7 26,197 + Rv0021c 0.29 +0.0 26,197 + Rv0021c 0.29 +0.6 26,198 - Rv0021c 0.29 +0.0 26,291 - Rv0021c 0.39 -0.7 26,622 + Rv0021c 0.73 +0.4 26,623 - Rv0021c 0.73 -0.7 26,623 - Rv0021c 0.73 +0.2 26,623 - Rv0021c 0.73 -0.1 26,780 + Rv0021c 0.89 -0.1 26,861 - +0.4 26,933 - +0.4 26,933 - -0.4 26,933 - -0.1 27,214 - Rv0022c 0.45 -0.8 27,245 + Rv0022c 0.53 +0.2 27,253 - Rv0022c 0.55 -0.4 27,253 - Rv0022c 0.55 -0.1 27,299 + Rv0022c 0.66 -0.0 27,300 - Rv0022c 0.66 -0.2 27,410 + -0.6 27,410 + -0.2 27,410 + -0.6 27,411 - -0.5 27,411 - +0.1 27,411 - +1.4 27,411 - +0.4
Or see this region's nucleotide sequence