Experiment: 7H9 with Ciprofloxacin Hydrochloride 0.0012 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0799c and Rv0800 are separated by 44 nucleotides Rv0800 and Rv0801 are separated by 11 nucleotides Rv0801 and Rv0802c overlap by 7 nucleotides
Rv0799c: Rv0799c - Conserved protein, at 892,266 to 893,273
Rv0799c
Rv0800: Rv0800 - Probable aminopeptidase PepC, at 893,318 to 894,619
Rv0800
Rv0801: Rv0801 - Conserved protein, at 894,631 to 894,978
Rv0801
Rv0802c: Rv0802c - Possible succinyltransferase in the GCN5-related N-acetyltransferase family, at 894,972 to 895,628
Rv0802c
Position (kb) 893
894
895 Strain fitness (log2 ratio) -2
-1
0
1
2 at 892.507 kb on + strand, within Rv0799c at 892.507 kb on + strand, within Rv0799c at 892.606 kb on - strand, within Rv0799c at 892.726 kb on + strand, within Rv0799c at 892.726 kb on + strand, within Rv0799c at 892.744 kb on + strand, within Rv0799c at 893.305 kb on + strand at 893.305 kb on + strand at 893.305 kb on + strand at 893.306 kb on - strand at 893.315 kb on + strand at 893.315 kb on + strand at 893.315 kb on + strand at 893.316 kb on - strand at 893.316 kb on - strand at 893.316 kb on - strand at 893.466 kb on - strand, within Rv0800 at 893.833 kb on - strand, within Rv0800 at 894.023 kb on + strand, within Rv0800 at 894.024 kb on - strand, within Rv0800 at 894.153 kb on + strand, within Rv0800 at 894.350 kb on + strand, within Rv0800 at 894.413 kb on - strand, within Rv0800 at 894.422 kb on + strand, within Rv0800 at 894.606 kb on + strand at 894.618 kb on - strand at 894.644 kb on + strand at 895.083 kb on + strand, within Rv0802c at 895.101 kb on - strand, within Rv0802c at 895.234 kb on + strand, within Rv0802c at 895.351 kb on - strand, within Rv0802c at 895.351 kb on - strand, within Rv0802c at 895.351 kb on - strand, within Rv0802c at 895.351 kb on - strand, within Rv0802c at 895.431 kb on + strand, within Rv0802c at 895.432 kb on - strand, within Rv0802c at 895.432 kb on - strand, within Rv0802c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ciprofloxacin Hydrochloride 0.0012 mM remove 892,507 + Rv0799c 0.24 -2.3 892,507 + Rv0799c 0.24 +0.3 892,606 - Rv0799c 0.34 -0.1 892,726 + Rv0799c 0.46 +0.6 892,726 + Rv0799c 0.46 -0.3 892,744 + Rv0799c 0.47 +1.8 893,305 + -0.6 893,305 + +1.8 893,305 + +0.2 893,306 - -0.7 893,315 + +1.8 893,315 + +0.6 893,315 + +0.2 893,316 - +1.0 893,316 - -1.0 893,316 - +0.0 893,466 - Rv0800 0.11 +0.2 893,833 - Rv0800 0.40 +0.5 894,023 + Rv0800 0.54 -0.2 894,024 - Rv0800 0.54 +0.7 894,153 + Rv0800 0.64 -1.4 894,350 + Rv0800 0.79 -1.1 894,413 - Rv0800 0.84 -1.0 894,422 + Rv0800 0.85 -0.1 894,606 + +0.0 894,618 - -1.8 894,644 + +0.8 895,083 + Rv0802c 0.17 -0.3 895,101 - Rv0802c 0.20 -0.5 895,234 + Rv0802c 0.40 -0.9 895,351 - Rv0802c 0.58 -1.5 895,351 - Rv0802c 0.58 +0.5 895,351 - Rv0802c 0.58 -1.8 895,351 - Rv0802c 0.58 +1.8 895,431 + Rv0802c 0.70 -1.2 895,432 - Rv0802c 0.70 -1.0 895,432 - Rv0802c 0.70 -0.3
Or see this region's nucleotide sequence