Experiment: 7H9 with Ciprofloxacin Hydrochloride 0.0012 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0669c and Rv0670 are separated by 194 nucleotides Rv0670 and Rv0671 are separated by 31 nucleotides Rv0671 and Rv0672 are separated by 59 nucleotides
Rv0669c: Rv0669c - Possible hydrolase, at 767,684 to 769,597
Rv0669c
Rv0670: Rv0670 - Probable endonuclease IV End (endodeoxyribonuclease IV) (apurinase), at 769,792 to 770,550
Rv0670
Rv0671: Rv0671 - Possible conserved lipoprotein LpqP, at 770,582 to 771,424
Rv0671
Rv0672: Rv0672 - Probable acyl-CoA dehydrogenase FadE8, at 771,484 to 773,112
Rv0672
Position (kb) 769
770
771 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 768.892 kb on - strand, within Rv0669c at 768.924 kb on + strand, within Rv0669c at 768.925 kb on - strand, within Rv0669c at 768.925 kb on - strand, within Rv0669c at 768.983 kb on - strand, within Rv0669c at 769.036 kb on + strand, within Rv0669c at 769.051 kb on + strand, within Rv0669c at 769.051 kb on + strand, within Rv0669c at 769.051 kb on + strand, within Rv0669c at 769.270 kb on - strand, within Rv0669c at 769.270 kb on - strand, within Rv0669c at 769.345 kb on - strand, within Rv0669c at 769.348 kb on + strand, within Rv0669c at 769.357 kb on - strand, within Rv0669c at 769.586 kb on + strand at 769.586 kb on + strand at 769.664 kb on - strand at 769.706 kb on - strand at 769.781 kb on - strand at 769.860 kb on - strand at 769.951 kb on + strand, within Rv0670 at 769.951 kb on + strand, within Rv0670 at 769.951 kb on + strand, within Rv0670 at 769.951 kb on + strand, within Rv0670 at 769.952 kb on - strand, within Rv0670 at 769.952 kb on - strand, within Rv0670 at 770.171 kb on - strand, within Rv0670 at 770.341 kb on - strand, within Rv0670 at 770.570 kb on + strand at 770.571 kb on - strand at 770.582 kb on - strand at 770.582 kb on - strand at 770.582 kb on - strand at 770.582 kb on - strand at 770.601 kb on + strand at 770.727 kb on - strand, within Rv0671 at 770.728 kb on + strand, within Rv0671 at 770.728 kb on + strand, within Rv0671 at 770.729 kb on - strand, within Rv0671 at 770.729 kb on - strand, within Rv0671 at 770.729 kb on - strand, within Rv0671 at 770.813 kb on + strand, within Rv0671 at 771.005 kb on + strand, within Rv0671 at 771.492 kb on + strand at 771.493 kb on - strand at 771.532 kb on + strand at 771.533 kb on - strand at 771.533 kb on - strand at 771.533 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ciprofloxacin Hydrochloride 0.0012 mM remove 768,892 - Rv0669c 0.63 +0.5 768,924 + Rv0669c 0.65 -0.3 768,925 - Rv0669c 0.65 -0.2 768,925 - Rv0669c 0.65 -0.2 768,983 - Rv0669c 0.68 +0.2 769,036 + Rv0669c 0.71 -0.4 769,051 + Rv0669c 0.71 +0.0 769,051 + Rv0669c 0.71 -0.9 769,051 + Rv0669c 0.71 +0.2 769,270 - Rv0669c 0.83 -0.5 769,270 - Rv0669c 0.83 -0.3 769,345 - Rv0669c 0.87 -0.5 769,348 + Rv0669c 0.87 -0.5 769,357 - Rv0669c 0.87 -0.2 769,586 + +0.0 769,586 + -0.3 769,664 - +3.8 769,706 - -0.4 769,781 - -1.0 769,860 - -0.0 769,951 + Rv0670 0.21 +1.2 769,951 + Rv0670 0.21 +0.2 769,951 + Rv0670 0.21 +0.7 769,951 + Rv0670 0.21 +0.1 769,952 - Rv0670 0.21 +0.1 769,952 - Rv0670 0.21 -1.3 770,171 - Rv0670 0.50 +0.2 770,341 - Rv0670 0.72 +0.2 770,570 + -0.0 770,571 - -1.7 770,582 - +0.0 770,582 - +0.1 770,582 - -0.1 770,582 - +2.4 770,601 + +0.2 770,727 - Rv0671 0.17 -0.3 770,728 + Rv0671 0.17 -0.1 770,728 + Rv0671 0.17 +0.1 770,729 - Rv0671 0.17 -0.2 770,729 - Rv0671 0.17 -0.9 770,729 - Rv0671 0.17 -0.5 770,813 + Rv0671 0.27 -0.9 771,005 + Rv0671 0.50 +0.4 771,492 + +0.3 771,493 - -2.4 771,532 + -0.1 771,533 - +0.6 771,533 - -0.3 771,533 - -0.2
Or see this region's nucleotide sequence