Experiment: 7H9 with Ciprofloxacin Hydrochloride 0.0012 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0573c and Rv0574c are separated by 9 nucleotides Rv0574c and Rv0575c are separated by 184 nucleotides
Rv0573c: Rv0573c - Nicotinic acid phosphoribosyltransferase PncB2, at 665,851 to 667,242
Rv0573c
Rv0574c: Rv0574c - Conserved hypothetical protein, at 667,252 to 668,394
Rv0574c
Rv0575c: Rv0575c - Possible oxidoreductase, at 668,579 to 669,745
Rv0575c
Position (kb) 667
668
669 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 666.260 kb on + strand, within Rv0573c at 666.261 kb on - strand, within Rv0573c at 666.539 kb on - strand, within Rv0573c at 666.548 kb on + strand, within Rv0573c at 666.549 kb on - strand, within Rv0573c at 666.549 kb on - strand, within Rv0573c at 666.717 kb on - strand, within Rv0573c at 667.028 kb on + strand, within Rv0573c at 667.104 kb on - strand at 667.254 kb on - strand at 667.267 kb on + strand at 667.472 kb on + strand, within Rv0574c at 667.473 kb on - strand, within Rv0574c at 667.473 kb on - strand, within Rv0574c at 667.473 kb on - strand, within Rv0574c at 667.524 kb on - strand, within Rv0574c at 667.572 kb on - strand, within Rv0574c at 667.572 kb on - strand, within Rv0574c at 667.572 kb on - strand, within Rv0574c at 667.572 kb on - strand, within Rv0574c at 667.573 kb on + strand, within Rv0574c at 667.573 kb on + strand, within Rv0574c at 667.574 kb on - strand, within Rv0574c at 667.574 kb on - strand, within Rv0574c at 667.676 kb on + strand, within Rv0574c at 667.677 kb on - strand, within Rv0574c at 667.709 kb on - strand, within Rv0574c at 668.087 kb on + strand, within Rv0574c at 668.261 kb on + strand, within Rv0574c at 668.280 kb on + strand at 668.282 kb on + strand at 668.282 kb on + strand at 668.282 kb on + strand at 668.283 kb on - strand at 668.440 kb on - strand at 668.446 kb on + strand at 668.447 kb on - strand at 668.447 kb on - strand at 668.447 kb on - strand at 668.461 kb on - strand at 668.548 kb on + strand at 668.549 kb on - strand at 668.835 kb on + strand, within Rv0575c at 668.835 kb on + strand, within Rv0575c at 668.881 kb on - strand, within Rv0575c at 669.154 kb on - strand, within Rv0575c at 669.154 kb on - strand, within Rv0575c at 669.162 kb on + strand, within Rv0575c at 669.162 kb on + strand, within Rv0575c at 669.162 kb on + strand, within Rv0575c at 669.162 kb on + strand, within Rv0575c at 669.226 kb on - strand, within Rv0575c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ciprofloxacin Hydrochloride 0.0012 mM remove 666,260 + Rv0573c 0.29 -0.0 666,261 - Rv0573c 0.29 +0.7 666,539 - Rv0573c 0.49 -0.7 666,548 + Rv0573c 0.50 -0.5 666,549 - Rv0573c 0.50 +1.0 666,549 - Rv0573c 0.50 -1.8 666,717 - Rv0573c 0.62 -0.4 667,028 + Rv0573c 0.85 -1.0 667,104 - +0.7 667,254 - -0.1 667,267 + +0.7 667,472 + Rv0574c 0.19 +1.5 667,473 - Rv0574c 0.19 +0.3 667,473 - Rv0574c 0.19 -3.1 667,473 - Rv0574c 0.19 +2.7 667,524 - Rv0574c 0.24 +0.5 667,572 - Rv0574c 0.28 +0.1 667,572 - Rv0574c 0.28 +0.6 667,572 - Rv0574c 0.28 +0.1 667,572 - Rv0574c 0.28 +0.2 667,573 + Rv0574c 0.28 -0.4 667,573 + Rv0574c 0.28 +1.5 667,574 - Rv0574c 0.28 +0.7 667,574 - Rv0574c 0.28 +0.3 667,676 + Rv0574c 0.37 +0.7 667,677 - Rv0574c 0.37 +0.3 667,709 - Rv0574c 0.40 -0.3 668,087 + Rv0574c 0.73 +0.3 668,261 + Rv0574c 0.88 -0.9 668,280 + -0.3 668,282 + -0.8 668,282 + -0.1 668,282 + +0.4 668,283 - +0.3 668,440 - -1.3 668,446 + -0.1 668,447 - -0.6 668,447 - -1.0 668,447 - -0.2 668,461 - -0.2 668,548 + -1.3 668,549 - -0.2 668,835 + Rv0575c 0.22 +0.1 668,835 + Rv0575c 0.22 -0.1 668,881 - Rv0575c 0.26 +2.1 669,154 - Rv0575c 0.49 +0.0 669,154 - Rv0575c 0.49 -0.4 669,162 + Rv0575c 0.50 +0.2 669,162 + Rv0575c 0.50 -0.3 669,162 + Rv0575c 0.50 +0.2 669,162 + Rv0575c 0.50 +1.7 669,226 - Rv0575c 0.55 +0.5
Or see this region's nucleotide sequence