Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0486 and Rv0487 overlap by 4 nucleotides Rv0487 and Rv0488 are separated by 325 nucleotides Rv0488 and Rv0489 are separated by 156 nucleotides
Rv0486: Rv0486 - Glycosyltransferase MshA, at 575,348 to 576,790
Rv0486
Rv0487: Rv0487 - Conserved hypothetical protein, at 576,787 to 577,338
Rv0487
Rv0488: Rv0488 - Probable conserved integral membrane protein, at 577,664 to 578,269
Rv0488
Rv0489: Rv0489 - Probable phosphoglycerate mutase 1 Gpm1 (phosphoglyceromutase) (PGAM) (BPG-dependent PGAM), at 578,426 to 579,175
Rv0489
Position (kb) 577
578
579 Strain fitness (log2 ratio) -2
-1
0
1
2 at 576.689 kb on + strand at 576.853 kb on + strand, within Rv0487 at 576.853 kb on + strand, within Rv0487 at 577.013 kb on + strand, within Rv0487 at 577.013 kb on + strand, within Rv0487 at 577.013 kb on + strand, within Rv0487 at 577.014 kb on - strand, within Rv0487 at 577.014 kb on - strand, within Rv0487 at 577.014 kb on - strand, within Rv0487 at 577.060 kb on + strand, within Rv0487 at 577.087 kb on + strand, within Rv0487 at 577.088 kb on - strand, within Rv0487 at 577.157 kb on + strand, within Rv0487 at 577.158 kb on - strand, within Rv0487 at 577.158 kb on - strand, within Rv0487 at 577.284 kb on - strand at 577.337 kb on - strand at 577.337 kb on - strand at 577.337 kb on - strand at 577.337 kb on - strand at 577.337 kb on - strand at 577.337 kb on - strand at 577.337 kb on - strand at 577.498 kb on + strand at 577.499 kb on - strand at 577.499 kb on - strand at 577.619 kb on + strand at 577.734 kb on - strand, within Rv0488 at 577.734 kb on - strand, within Rv0488 at 577.832 kb on - strand, within Rv0488 at 578.003 kb on + strand, within Rv0488 at 578.003 kb on + strand, within Rv0488 at 578.098 kb on - strand, within Rv0488 at 578.098 kb on - strand, within Rv0488 at 578.098 kb on - strand, within Rv0488 at 578.278 kb on + strand at 578.291 kb on + strand at 578.291 kb on + strand at 579.173 kb on + strand at 579.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 576,689 + -0.7 576,853 + Rv0487 0.12 +0.1 576,853 + Rv0487 0.12 +2.0 577,013 + Rv0487 0.41 -0.2 577,013 + Rv0487 0.41 +0.3 577,013 + Rv0487 0.41 +0.0 577,014 - Rv0487 0.41 +0.6 577,014 - Rv0487 0.41 +0.0 577,014 - Rv0487 0.41 -0.1 577,060 + Rv0487 0.49 +0.1 577,087 + Rv0487 0.54 +0.0 577,088 - Rv0487 0.55 +0.8 577,157 + Rv0487 0.67 +0.1 577,158 - Rv0487 0.67 +0.5 577,158 - Rv0487 0.67 +0.3 577,284 - -0.2 577,337 - -2.0 577,337 - -0.1 577,337 - +1.5 577,337 - -0.4 577,337 - +0.1 577,337 - -2.0 577,337 - +1.9 577,498 + -0.2 577,499 - +0.3 577,499 - -0.3 577,619 + +0.7 577,734 - Rv0488 0.12 +0.3 577,734 - Rv0488 0.12 -0.4 577,832 - Rv0488 0.28 +0.1 578,003 + Rv0488 0.56 +1.2 578,003 + Rv0488 0.56 +0.2 578,098 - Rv0488 0.72 -0.0 578,098 - Rv0488 0.72 -0.2 578,098 - Rv0488 0.72 -0.9 578,278 + -0.2 578,291 + -0.5 578,291 + +0.1 579,173 + +0.2 579,174 - -0.8
Or see this region's nucleotide sequence