Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0797 and Rv0798c overlap by 11 nucleotides Rv0798c and Rv0799c overlap by 4 nucleotides Rv0799c and Rv0800 are separated by 44 nucleotides
Rv0797: Rv0797 - Putative transposase for insertion sequence element IS1547, at 890,388 to 891,482
Rv0797
Rv0798c: Rv0798c - 29 KDa antigen CFP29, at 891,472 to 892,269
Rv0798c
Rv0799c: Rv0799c - Conserved protein, at 892,266 to 893,273
Rv0799c
Rv0800: Rv0800 - Probable aminopeptidase PepC, at 893,318 to 894,619
Rv0800
Position (kb) 892
893
894 Strain fitness (log2 ratio) -1
0
1
2 at 891.453 kb on + strand at 891.598 kb on + strand, within Rv0798c at 891.737 kb on + strand, within Rv0798c at 891.914 kb on - strand, within Rv0798c at 892.024 kb on - strand, within Rv0798c at 892.507 kb on + strand, within Rv0799c at 892.507 kb on + strand, within Rv0799c at 892.606 kb on - strand, within Rv0799c at 892.726 kb on + strand, within Rv0799c at 892.726 kb on + strand, within Rv0799c at 892.744 kb on + strand, within Rv0799c at 893.305 kb on + strand at 893.305 kb on + strand at 893.305 kb on + strand at 893.306 kb on - strand at 893.315 kb on + strand at 893.315 kb on + strand at 893.315 kb on + strand at 893.316 kb on - strand at 893.316 kb on - strand at 893.316 kb on - strand at 893.466 kb on - strand, within Rv0800 at 893.833 kb on - strand, within Rv0800 at 894.023 kb on + strand, within Rv0800 at 894.024 kb on - strand, within Rv0800 at 894.153 kb on + strand, within Rv0800
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 891,453 + -0.1 891,598 + Rv0798c 0.16 -0.4 891,737 + Rv0798c 0.33 +0.3 891,914 - Rv0798c 0.55 +1.8 892,024 - Rv0798c 0.69 +0.4 892,507 + Rv0799c 0.24 -0.7 892,507 + Rv0799c 0.24 -0.2 892,606 - Rv0799c 0.34 -0.7 892,726 + Rv0799c 0.46 +0.3 892,726 + Rv0799c 0.46 +0.1 892,744 + Rv0799c 0.47 +1.8 893,305 + -0.8 893,305 + +1.8 893,305 + +0.1 893,306 - -0.0 893,315 + +0.2 893,315 + +0.7 893,315 + +0.2 893,316 - +0.7 893,316 - +0.1 893,316 - -0.1 893,466 - Rv0800 0.11 +0.2 893,833 - Rv0800 0.40 +0.8 894,023 + Rv0800 0.54 -0.2 894,024 - Rv0800 0.54 -1.1 894,153 + Rv0800 0.64 +0.3
Or see this region's nucleotide sequence