Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0604 and Rv0605 are separated by 216 nucleotides Rv0605 and Rv0606 are separated by 1 nucleotides Rv0606 and Rv0607 are separated by 53 nucleotides Rv0607 and Rv0608 are separated by 44 nucleotides Rv0608 and Rv0609 overlap by 4 nucleotides
Rv0604: Rv0604 - Probable conserved lipoprotein LpqO, at 700,239 to 701,189
Rv0604
Rv0605: Rv0605 - Possible resolvase, at 701,406 to 702,014
Rv0605
Rv0606: Rv0606 - Possible transposase (fragment), at 702,016 to 702,759
Rv0606
Rv0607: Rv0607 - Hypothetical protein, at 702,813 to 703,199
Rv0607
Rv0608: Rv0608 - Possible antitoxin VapB28, at 703,244 to 703,489
Rv0608
Rv0609: Rv0609 - Possible toxin VapC28. Contains PIN domain., at 703,486 to 703,887
Rv0609
Position (kb) 702
703 Strain fitness (log2 ratio) -2
-1
0
1 at 701.069 kb on - strand, within Rv0604 at 701.106 kb on + strand at 701.106 kb on + strand at 701.106 kb on + strand at 701.107 kb on - strand at 701.208 kb on - strand at 701.348 kb on + strand at 701.349 kb on - strand at 701.397 kb on + strand at 701.398 kb on - strand at 701.418 kb on - strand at 701.430 kb on - strand at 701.430 kb on - strand at 701.430 kb on - strand at 701.430 kb on - strand at 701.430 kb on - strand at 701.592 kb on + strand, within Rv0605 at 701.592 kb on + strand, within Rv0605 at 701.732 kb on + strand, within Rv0605 at 701.733 kb on - strand, within Rv0605 at 701.733 kb on - strand, within Rv0605 at 701.733 kb on - strand, within Rv0605 at 701.817 kb on + strand, within Rv0605 at 701.818 kb on - strand, within Rv0605 at 702.133 kb on + strand, within Rv0606 at 702.134 kb on - strand, within Rv0606 at 702.134 kb on - strand, within Rv0606 at 702.310 kb on + strand, within Rv0606 at 702.477 kb on + strand, within Rv0606 at 702.477 kb on + strand, within Rv0606 at 702.514 kb on - strand, within Rv0606 at 703.007 kb on - strand, within Rv0607 at 703.463 kb on + strand, within Rv0608 at 703.463 kb on + strand, within Rv0608
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 701,069 - Rv0604 0.87 +0.3 701,106 + +0.8 701,106 + -0.4 701,106 + -0.3 701,107 - -0.6 701,208 - -0.2 701,348 + +0.1 701,349 - -1.1 701,397 + -0.5 701,398 - -0.1 701,418 - -0.5 701,430 - -1.7 701,430 - +0.1 701,430 - +0.5 701,430 - +0.1 701,430 - -0.1 701,592 + Rv0605 0.31 -0.5 701,592 + Rv0605 0.31 -0.4 701,732 + Rv0605 0.54 -0.8 701,733 - Rv0605 0.54 -0.4 701,733 - Rv0605 0.54 -0.3 701,733 - Rv0605 0.54 -0.0 701,817 + Rv0605 0.67 -1.7 701,818 - Rv0605 0.68 +0.1 702,133 + Rv0606 0.16 -0.3 702,134 - Rv0606 0.16 -0.5 702,134 - Rv0606 0.16 -0.3 702,310 + Rv0606 0.40 -1.1 702,477 + Rv0606 0.62 -0.1 702,477 + Rv0606 0.62 -0.9 702,514 - Rv0606 0.67 -0.6 703,007 - Rv0607 0.50 -0.6 703,463 + Rv0608 0.89 -1.8 703,463 + Rv0608 0.89 +1.0
Or see this region's nucleotide sequence