Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0146

Experiment: 7H9 with Vancomycin Hydrochloride from Streptomyces orientalis 0.012 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv0145 and Rv0146 are separated by 42 nucleotidesRv0146 and Rv0147 are separated by 94 nucleotides Rv0145: Rv0145 - Possible S-adenosylmethionine-dependent methyltransferase, at 171,215 to 172,168 Rv0145 Rv0146: Rv0146 - Possible S-adenosylmethionine-dependent methyltransferase, at 172,211 to 173,143 Rv0146 Rv0147: Rv0147 - Probable aldehyde dehydrogenase (NAD+) dependent, at 173,238 to 174,758 Rv0147 Position (kb) 172 173 174Strain fitness (log2 ratio) -2 -1 0 1 2 3at 171.489 kb on - strand, within Rv0145at 171.521 kb on + strand, within Rv0145at 171.657 kb on - strand, within Rv0145at 171.657 kb on - strand, within Rv0145at 171.753 kb on + strand, within Rv0145at 171.753 kb on + strand, within Rv0145at 171.808 kb on - strand, within Rv0145at 171.958 kb on - strand, within Rv0145at 171.984 kb on - strand, within Rv0145at 172.399 kb on - strand, within Rv0146at 172.487 kb on - strand, within Rv0146at 172.487 kb on - strand, within Rv0146at 172.490 kb on + strand, within Rv0146at 172.490 kb on + strand, within Rv0146at 172.491 kb on - strand, within Rv0146at 172.527 kb on + strand, within Rv0146at 172.595 kb on + strand, within Rv0146at 172.596 kb on - strand, within Rv0146at 172.625 kb on + strand, within Rv0146at 172.625 kb on + strand, within Rv0146at 172.625 kb on + strand, within Rv0146at 172.625 kb on + strand, within Rv0146at 172.626 kb on - strand, within Rv0146at 172.626 kb on - strand, within Rv0146at 172.781 kb on + strand, within Rv0146at 172.781 kb on + strand, within Rv0146at 172.781 kb on + strand, within Rv0146at 172.782 kb on - strand, within Rv0146at 172.782 kb on - strand, within Rv0146at 172.782 kb on - strand, within Rv0146at 172.784 kb on - strand, within Rv0146at 172.785 kb on + strand, within Rv0146at 172.970 kb on + strand, within Rv0146at 172.971 kb on - strand, within Rv0146at 172.971 kb on - strand, within Rv0146at 173.141 kb on + strandat 173.141 kb on + strandat 173.142 kb on - strandat 173.164 kb on + strandat 173.164 kb on + strandat 173.164 kb on + strandat 173.164 kb on + strandat 173.164 kb on + strandat 173.164 kb on + strandat 173.164 kb on + strandat 173.164 kb on + strandat 173.164 kb on + strandat 173.164 kb on + strandat 173.165 kb on - strandat 173.165 kb on - strandat 173.165 kb on - strandat 173.165 kb on - strandat 173.165 kb on - strandat 173.165 kb on - strandat 173.165 kb on - strandat 173.165 kb on - strandat 173.166 kb on + strandat 173.166 kb on + strandat 173.167 kb on - strandat 173.167 kb on - strandat 173.167 kb on - strandat 173.168 kb on + strandat 173.177 kb on - strandat 173.177 kb on - strandat 173.177 kb on - strandat 173.177 kb on - strandat 173.177 kb on - strandat 173.177 kb on - strandat 173.178 kb on + strandat 173.179 kb on - strandat 173.179 kb on - strandat 173.179 kb on - strandat 173.179 kb on - strandat 173.195 kb on + strandat 173.196 kb on - strandat 173.196 kb on - strandat 173.196 kb on - strandat 173.219 kb on - strandat 173.219 kb on - strandat 173.385 kb on - strandat 173.548 kb on - strand, within Rv0147at 173.548 kb on - strand, within Rv0147at 173.586 kb on + strand, within Rv0147at 173.626 kb on - strand, within Rv0147at 173.673 kb on + strand, within Rv0147at 173.674 kb on - strand, within Rv0147at 173.695 kb on + strand, within Rv0147at 173.696 kb on - strand, within Rv0147at 173.696 kb on - strand, within Rv0147at 173.696 kb on - strand, within Rv0147at 173.724 kb on + strand, within Rv0147at 173.832 kb on + strand, within Rv0147at 173.832 kb on + strand, within Rv0147at 173.832 kb on + strand, within Rv0147at 173.832 kb on + strand, within Rv0147at 173.832 kb on + strand, within Rv0147at 173.833 kb on - strand, within Rv0147at 173.838 kb on + strand, within Rv0147at 173.839 kb on - strand, within Rv0147at 173.958 kb on + strand, within Rv0147at 173.958 kb on + strand, within Rv0147at 173.959 kb on - strand, within Rv0147at 174.043 kb on + strand, within Rv0147at 174.043 kb on + strand, within Rv0147at 174.043 kb on + strand, within Rv0147at 174.044 kb on - strand, within Rv0147at 174.044 kb on - strand, within Rv0147at 174.044 kb on - strand, within Rv0147at 174.115 kb on - strand, within Rv0147at 174.115 kb on - strand, within Rv0147

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Per-strain Table

Position Strand Gene LocusTag Fraction 7H9 with Vancomycin Hydrochloride from Streptomyces orientalis 0.012 mM
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171,489 - Rv0145 0.29 +0.8
171,521 + Rv0145 0.32 -0.2
171,657 - Rv0145 0.46 -0.1
171,657 - Rv0145 0.46 -0.3
171,753 + Rv0145 0.56 -0.2
171,753 + Rv0145 0.56 -1.0
171,808 - Rv0145 0.62 -1.7
171,958 - Rv0145 0.78 -0.1
171,984 - Rv0145 0.81 -0.3
172,399 - Rv0146 0.20 +0.8
172,487 - Rv0146 0.30 -1.0
172,487 - Rv0146 0.30 +1.3
172,490 + Rv0146 0.30 -0.3
172,490 + Rv0146 0.30 +0.3
172,491 - Rv0146 0.30 +1.4
172,527 + Rv0146 0.34 -0.5
172,595 + Rv0146 0.41 -0.4
172,596 - Rv0146 0.41 -0.2
172,625 + Rv0146 0.44 +0.9
172,625 + Rv0146 0.44 +1.4
172,625 + Rv0146 0.44 +0.8
172,625 + Rv0146 0.44 -0.0
172,626 - Rv0146 0.44 -0.6
172,626 - Rv0146 0.44 -0.6
172,781 + Rv0146 0.61 +0.6
172,781 + Rv0146 0.61 +1.1
172,781 + Rv0146 0.61 -0.4
172,782 - Rv0146 0.61 -0.4
172,782 - Rv0146 0.61 +0.0
172,782 - Rv0146 0.61 +0.2
172,784 - Rv0146 0.61 -0.4
172,785 + Rv0146 0.62 -2.4
172,970 + Rv0146 0.81 +1.4
172,971 - Rv0146 0.81 +1.1
172,971 - Rv0146 0.81 +0.8
173,141 + +0.0
173,141 + +0.1
173,142 - -0.1
173,164 + -0.5
173,164 + +1.6
173,164 + +0.0
173,164 + -0.2
173,164 + -1.6
173,164 + -1.7
173,164 + -0.1
173,164 + -0.4
173,164 + -0.3
173,164 + -1.0
173,165 - +0.1
173,165 - +1.3
173,165 - +0.0
173,165 - -0.1
173,165 - +0.2
173,165 - +0.5
173,165 - +1.1
173,165 - -0.1
173,166 + -0.1
173,166 + -1.4
173,167 - -0.2
173,167 - -0.9
173,167 - +0.2
173,168 + +1.1
173,177 - +1.9
173,177 - -0.4
173,177 - +0.0
173,177 - -1.5
173,177 - -0.7
173,177 - -1.4
173,178 + +0.5
173,179 - +0.2
173,179 - +0.5
173,179 - +1.9
173,179 - +0.6
173,195 + -0.4
173,196 - -0.5
173,196 - -0.2
173,196 - -1.0
173,219 - -2.0
173,219 - +0.0
173,385 - -0.6
173,548 - Rv0147 0.20 +0.3
173,548 - Rv0147 0.20 -2.3
173,586 + Rv0147 0.23 +3.1
173,626 - Rv0147 0.26 +0.4
173,673 + Rv0147 0.29 +0.9
173,674 - Rv0147 0.29 -0.2
173,695 + Rv0147 0.30 +0.2
173,696 - Rv0147 0.30 +0.3
173,696 - Rv0147 0.30 +0.8
173,696 - Rv0147 0.30 -0.3
173,724 + Rv0147 0.32 +0.4
173,832 + Rv0147 0.39 -0.4
173,832 + Rv0147 0.39 +0.7
173,832 + Rv0147 0.39 +0.1
173,832 + Rv0147 0.39 -2.0
173,832 + Rv0147 0.39 +0.2
173,833 - Rv0147 0.39 +0.7
173,838 + Rv0147 0.39 -0.8
173,839 - Rv0147 0.40 -0.2
173,958 + Rv0147 0.47 -0.7
173,958 + Rv0147 0.47 -0.0
173,959 - Rv0147 0.47 +0.1
174,043 + Rv0147 0.53 +0.7
174,043 + Rv0147 0.53 -0.0
174,043 + Rv0147 0.53 +0.2
174,044 - Rv0147 0.53 -0.5
174,044 - Rv0147 0.53 +0.2
174,044 - Rv0147 0.53 -1.3
174,115 - Rv0147 0.58 +0.5
174,115 - Rv0147 0.58 -0.5

Or see this region's nucleotide sequence