Experiment: 7H9 with Chlorhexidine diacetate salt 0.0021 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0088 and Rv0089 are separated by 156 nucleotides Rv0089 and Rv0090 are separated by 128 nucleotides Rv0090 and Rv0091 are separated by 433 nucleotides
Rv0088: Rv0088 - Possible polyketide cyclase/dehydrase, at 96,927 to 97,601
Rv0088
Rv0089: Rv0089 - Possible methyltransferase/methylase, at 97,758 to 98,351
Rv0089
Rv0090: Rv0090 - Possible membrane protein, at 98,480 to 99,250
Rv0090
Rv0091: Rv0091 - Probable bifunctional MTA/SAH nucleosidase Mtn: 5'-methylthioadenosine nucleosidase (methylthioadenosine methylthioribohydrolase) + S-adenosylhomocysteine nucleosidase (S-adenosyl-L-homocysteine homocysteinylribohydrolase), at 99,684 to 100,451
Rv0091
Position (kb) 98
99
100 Strain fitness (log2 ratio) -2
-1
0
1
2 at 97.581 kb on + strand at 97.668 kb on + strand at 97.707 kb on + strand at 97.707 kb on + strand at 97.888 kb on + strand, within Rv0089 at 97.893 kb on + strand, within Rv0089 at 98.261 kb on - strand, within Rv0089 at 98.397 kb on - strand at 98.437 kb on + strand at 98.468 kb on + strand at 98.468 kb on + strand at 98.469 kb on - strand at 98.469 kb on - strand at 98.614 kb on - strand, within Rv0090 at 98.693 kb on - strand, within Rv0090 at 98.819 kb on - strand, within Rv0090 at 99.137 kb on + strand, within Rv0090 at 99.138 kb on - strand, within Rv0090 at 99.188 kb on + strand at 99.940 kb on + strand, within Rv0091 at 99.941 kb on - strand, within Rv0091 at 99.941 kb on - strand, within Rv0091 at 100.021 kb on - strand, within Rv0091 at 100.176 kb on + strand, within Rv0091 at 100.179 kb on + strand, within Rv0091 at 100.179 kb on + strand, within Rv0091 at 100.207 kb on - strand, within Rv0091 at 100.207 kb on - strand, within Rv0091
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Chlorhexidine diacetate salt 0.0021 mM remove 97,581 + +0.2 97,668 + -0.3 97,707 + +0.1 97,707 + +0.0 97,888 + Rv0089 0.22 -0.3 97,893 + Rv0089 0.23 +0.3 98,261 - Rv0089 0.85 -0.8 98,397 - +0.0 98,437 + -0.4 98,468 + -0.6 98,468 + +0.0 98,469 - +0.9 98,469 - -2.3 98,614 - Rv0090 0.17 +1.0 98,693 - Rv0090 0.28 -1.0 98,819 - Rv0090 0.44 -1.2 99,137 + Rv0090 0.85 -0.3 99,138 - Rv0090 0.85 +2.0 99,188 + +0.7 99,940 + Rv0091 0.33 +1.0 99,941 - Rv0091 0.33 -0.3 99,941 - Rv0091 0.33 -0.8 100,021 - Rv0091 0.44 +1.7 100,176 + Rv0091 0.64 -0.2 100,179 + Rv0091 0.64 +0.4 100,179 + Rv0091 0.64 +0.8 100,207 - Rv0091 0.68 +0.6 100,207 - Rv0091 0.68 -0.0
Or see this region's nucleotide sequence