Experiment: 7H9 with Chlorhexidine diacetate salt 0.0021 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0073 and Rv0074 are separated by 79 nucleotides Rv0074 and Rv0075 are separated by 12 nucleotides
Rv0073: Rv0073 - Probable glutamine-transport ATP-binding protein ABC transporter, at 81,676 to 82,668
Rv0073
Rv0074: Rv0074 - Conserved protein, at 82,748 to 83,983
Rv0074
Rv0075: Rv0075 - Probable aminotransferase, at 83,996 to 85,168
Rv0075
Position (kb) 82
83
84 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 81.896 kb on + strand, within Rv0073 at 81.896 kb on + strand, within Rv0073 at 81.897 kb on - strand, within Rv0073 at 81.897 kb on - strand, within Rv0073 at 81.927 kb on + strand, within Rv0073 at 81.927 kb on + strand, within Rv0073 at 81.928 kb on - strand, within Rv0073 at 81.928 kb on - strand, within Rv0073 at 82.004 kb on + strand, within Rv0073 at 82.005 kb on - strand, within Rv0073 at 82.362 kb on - strand, within Rv0073 at 82.417 kb on + strand, within Rv0073 at 82.505 kb on - strand, within Rv0073 at 82.585 kb on + strand at 82.586 kb on - strand at 82.587 kb on + strand at 82.588 kb on - strand at 82.588 kb on - strand at 82.666 kb on + strand at 82.687 kb on - strand at 83.114 kb on + strand, within Rv0074 at 83.114 kb on + strand, within Rv0074 at 83.114 kb on + strand, within Rv0074 at 83.115 kb on - strand, within Rv0074 at 83.141 kb on + strand, within Rv0074 at 83.403 kb on + strand, within Rv0074 at 83.403 kb on + strand, within Rv0074 at 83.403 kb on + strand, within Rv0074 at 83.404 kb on - strand, within Rv0074 at 83.409 kb on + strand, within Rv0074 at 83.409 kb on + strand, within Rv0074 at 83.585 kb on + strand, within Rv0074 at 83.586 kb on - strand, within Rv0074 at 83.738 kb on + strand, within Rv0074 at 83.738 kb on + strand, within Rv0074 at 83.846 kb on + strand, within Rv0074 at 83.941 kb on - strand at 83.941 kb on - strand at 83.982 kb on - strand at 84.066 kb on - strand at 84.082 kb on - strand at 84.234 kb on - strand, within Rv0075 at 84.353 kb on + strand, within Rv0075 at 84.353 kb on + strand, within Rv0075 at 84.353 kb on + strand, within Rv0075 at 84.353 kb on + strand, within Rv0075 at 84.494 kb on - strand, within Rv0075 at 84.494 kb on - strand, within Rv0075 at 84.544 kb on - strand, within Rv0075 at 84.544 kb on - strand, within Rv0075 at 84.544 kb on - strand, within Rv0075 at 84.743 kb on - strand, within Rv0075 at 84.834 kb on - strand, within Rv0075 at 84.834 kb on - strand, within Rv0075 at 84.918 kb on + strand, within Rv0075 at 84.919 kb on - strand, within Rv0075 at 84.919 kb on - strand, within Rv0075 at 84.952 kb on + strand, within Rv0075 at 84.953 kb on - strand, within Rv0075 at 84.956 kb on + strand, within Rv0075 at 84.956 kb on + strand, within Rv0075 at 84.957 kb on - strand, within Rv0075
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Chlorhexidine diacetate salt 0.0021 mM remove 81,896 + Rv0073 0.22 -0.1 81,896 + Rv0073 0.22 -1.4 81,897 - Rv0073 0.22 -0.3 81,897 - Rv0073 0.22 +0.2 81,927 + Rv0073 0.25 -0.3 81,927 + Rv0073 0.25 +0.2 81,928 - Rv0073 0.25 +0.4 81,928 - Rv0073 0.25 -0.4 82,004 + Rv0073 0.33 -0.2 82,005 - Rv0073 0.33 -0.7 82,362 - Rv0073 0.69 +0.3 82,417 + Rv0073 0.75 -0.5 82,505 - Rv0073 0.83 -0.6 82,585 + +2.0 82,586 - +0.2 82,587 + +1.0 82,588 - +0.9 82,588 - +1.0 82,666 + +0.4 82,687 - -0.1 83,114 + Rv0074 0.30 -0.3 83,114 + Rv0074 0.30 -0.4 83,114 + Rv0074 0.30 -0.6 83,115 - Rv0074 0.30 -0.7 83,141 + Rv0074 0.32 +0.9 83,403 + Rv0074 0.53 -1.0 83,403 + Rv0074 0.53 -1.6 83,403 + Rv0074 0.53 -1.3 83,404 - Rv0074 0.53 +0.4 83,409 + Rv0074 0.53 +1.0 83,409 + Rv0074 0.53 -2.0 83,585 + Rv0074 0.68 -0.2 83,586 - Rv0074 0.68 -0.1 83,738 + Rv0074 0.80 -0.5 83,738 + Rv0074 0.80 -1.3 83,846 + Rv0074 0.89 -0.1 83,941 - +2.0 83,941 - +0.4 83,982 - -0.2 84,066 - +0.3 84,082 - +1.1 84,234 - Rv0075 0.20 +0.3 84,353 + Rv0075 0.30 -0.6 84,353 + Rv0075 0.30 +0.2 84,353 + Rv0075 0.30 -0.3 84,353 + Rv0075 0.30 -0.3 84,494 - Rv0075 0.42 +3.4 84,494 - Rv0075 0.42 +2.0 84,544 - Rv0075 0.47 -0.2 84,544 - Rv0075 0.47 +0.4 84,544 - Rv0075 0.47 -1.1 84,743 - Rv0075 0.64 +0.1 84,834 - Rv0075 0.71 +0.9 84,834 - Rv0075 0.71 +0.3 84,918 + Rv0075 0.79 -0.6 84,919 - Rv0075 0.79 -1.1 84,919 - Rv0075 0.79 +0.2 84,952 + Rv0075 0.82 -0.5 84,953 - Rv0075 0.82 -0.6 84,956 + Rv0075 0.82 +2.3 84,956 + Rv0075 0.82 +1.4 84,957 - Rv0075 0.82 +0.9
Or see this region's nucleotide sequence