Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17905

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17915 and HMPREF1058_RS17910 are separated by 12 nucleotidesHMPREF1058_RS17910 and HMPREF1058_RS17905 are separated by 176 nucleotidesHMPREF1058_RS17905 and HMPREF1058_RS17900 are separated by 20 nucleotidesHMPREF1058_RS17900 and HMPREF1058_RS17895 are separated by 104 nucleotides HMPREF1058_RS17915: HMPREF1058_RS17915 - PspC domain-containing protein, at 302,126 to 303,172 _RS17915 HMPREF1058_RS17910: HMPREF1058_RS17910 - PadR family transcriptional regulator, at 303,185 to 303,511 _RS17910 HMPREF1058_RS17905: HMPREF1058_RS17905 - GNAT family N-acetyltransferase, at 303,688 to 304,185 _RS17905 HMPREF1058_RS17900: HMPREF1058_RS17900 - DNA alkylation repair protein, at 304,206 to 304,922 _RS17900 HMPREF1058_RS17895: HMPREF1058_RS17895 - hypothetical protein, at 305,027 to 306,277 _RS17895 Position (kb) 303 304 305Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 302.701 kb on + strand, within HMPREF1058_RS17915at 302.716 kb on + strand, within HMPREF1058_RS17915at 302.717 kb on - strand, within HMPREF1058_RS17915at 302.760 kb on - strand, within HMPREF1058_RS17915at 302.767 kb on + strandat 302.768 kb on - strand, within HMPREF1058_RS17915at 302.796 kb on + strand, within HMPREF1058_RS17915at 302.797 kb on - strand, within HMPREF1058_RS17915at 302.825 kb on + strand, within HMPREF1058_RS17915at 302.829 kb on - strand, within HMPREF1058_RS17915at 302.829 kb on - strand, within HMPREF1058_RS17915at 302.833 kb on + strand, within HMPREF1058_RS17915at 302.972 kb on - strand, within HMPREF1058_RS17915at 303.019 kb on + strand, within HMPREF1058_RS17915at 303.020 kb on - strand, within HMPREF1058_RS17915at 303.023 kb on + strand, within HMPREF1058_RS17915at 303.023 kb on + strand, within HMPREF1058_RS17915at 303.024 kb on - strand, within HMPREF1058_RS17915at 303.030 kb on - strand, within HMPREF1058_RS17915at 303.090 kb on - strandat 303.093 kb on + strandat 303.094 kb on - strandat 303.128 kb on - strandat 303.128 kb on - strandat 303.130 kb on - strandat 303.175 kb on + strandat 303.277 kb on + strand, within HMPREF1058_RS17910at 303.283 kb on - strand, within HMPREF1058_RS17910at 303.377 kb on + strand, within HMPREF1058_RS17910at 303.453 kb on - strand, within HMPREF1058_RS17910at 303.601 kb on + strandat 303.663 kb on - strandat 303.671 kb on - strandat 303.680 kb on + strandat 303.721 kb on - strandat 303.799 kb on + strand, within HMPREF1058_RS17905at 303.817 kb on + strand, within HMPREF1058_RS17905at 303.818 kb on - strand, within HMPREF1058_RS17905at 303.818 kb on - strand, within HMPREF1058_RS17905at 303.865 kb on + strand, within HMPREF1058_RS17905at 303.865 kb on + strand, within HMPREF1058_RS17905at 303.866 kb on - strand, within HMPREF1058_RS17905at 303.868 kb on + strand, within HMPREF1058_RS17905at 303.868 kb on + strand, within HMPREF1058_RS17905at 303.868 kb on + strand, within HMPREF1058_RS17905at 303.869 kb on - strand, within HMPREF1058_RS17905at 303.872 kb on + strand, within HMPREF1058_RS17905at 303.873 kb on - strand, within HMPREF1058_RS17905at 303.877 kb on + strand, within HMPREF1058_RS17905at 303.878 kb on - strand, within HMPREF1058_RS17905at 303.878 kb on - strand, within HMPREF1058_RS17905at 303.953 kb on - strand, within HMPREF1058_RS17905at 303.956 kb on + strand, within HMPREF1058_RS17905at 303.957 kb on - strand, within HMPREF1058_RS17905at 304.136 kb on + strandat 304.152 kb on + strandat 304.153 kb on - strandat 304.153 kb on - strandat 304.153 kb on - strandat 304.164 kb on + strandat 304.189 kb on + strandat 304.238 kb on - strandat 304.383 kb on + strand, within HMPREF1058_RS17900at 304.384 kb on - strand, within HMPREF1058_RS17900at 304.401 kb on - strand, within HMPREF1058_RS17900at 304.405 kb on - strand, within HMPREF1058_RS17900at 304.407 kb on + strand, within HMPREF1058_RS17900at 304.409 kb on + strand, within HMPREF1058_RS17900at 304.421 kb on + strand, within HMPREF1058_RS17900at 304.421 kb on + strand, within HMPREF1058_RS17900at 304.421 kb on + strand, within HMPREF1058_RS17900at 304.422 kb on - strand, within HMPREF1058_RS17900at 304.422 kb on - strand, within HMPREF1058_RS17900at 304.426 kb on + strand, within HMPREF1058_RS17900at 304.439 kb on - strand, within HMPREF1058_RS17900at 304.442 kb on - strand, within HMPREF1058_RS17900at 304.474 kb on - strand, within HMPREF1058_RS17900at 304.497 kb on - strand, within HMPREF1058_RS17900at 304.623 kb on + strand, within HMPREF1058_RS17900at 304.645 kb on + strand, within HMPREF1058_RS17900at 304.677 kb on + strand, within HMPREF1058_RS17900at 304.677 kb on + strand, within HMPREF1058_RS17900at 304.677 kb on + strand, within HMPREF1058_RS17900at 304.680 kb on - strand, within HMPREF1058_RS17900at 304.681 kb on + strand, within HMPREF1058_RS17900at 304.681 kb on + strand, within HMPREF1058_RS17900at 304.726 kb on - strand, within HMPREF1058_RS17900at 304.729 kb on - strand, within HMPREF1058_RS17900at 304.744 kb on + strand, within HMPREF1058_RS17900at 304.745 kb on - strand, within HMPREF1058_RS17900at 304.763 kb on - strand, within HMPREF1058_RS17900at 304.767 kb on + strand, within HMPREF1058_RS17900at 304.768 kb on - strand, within HMPREF1058_RS17900at 304.827 kb on - strand, within HMPREF1058_RS17900at 304.855 kb on + strandat 304.920 kb on + strandat 304.921 kb on - strandat 305.009 kb on - strandat 305.011 kb on + strandat 305.084 kb on + strandat 305.084 kb on + strandat 305.084 kb on + strandat 305.108 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5
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302,701 + HMPREF1058_RS17915 0.55 -0.5
302,716 + HMPREF1058_RS17915 0.56 -1.6
302,717 - HMPREF1058_RS17915 0.56 -0.2
302,760 - HMPREF1058_RS17915 0.61 +1.6
302,767 + -1.0
302,768 - HMPREF1058_RS17915 0.61 -1.2
302,796 + HMPREF1058_RS17915 0.64 -2.3
302,797 - HMPREF1058_RS17915 0.64 -0.6
302,825 + HMPREF1058_RS17915 0.67 -1.0
302,829 - HMPREF1058_RS17915 0.67 +0.7
302,829 - HMPREF1058_RS17915 0.67 +0.5
302,833 + HMPREF1058_RS17915 0.68 +0.8
302,972 - HMPREF1058_RS17915 0.81 +4.3
303,019 + HMPREF1058_RS17915 0.85 -2.3
303,020 - HMPREF1058_RS17915 0.85 +0.0
303,023 + HMPREF1058_RS17915 0.86 -0.6
303,023 + HMPREF1058_RS17915 0.86 +1.0
303,024 - HMPREF1058_RS17915 0.86 +0.5
303,030 - HMPREF1058_RS17915 0.86 -3.6
303,090 - -1.0
303,093 + -1.0
303,094 - -0.3
303,128 - +0.0
303,128 - +0.4
303,130 - -0.4
303,175 + -1.8
303,277 + HMPREF1058_RS17910 0.28 -1.8
303,283 - HMPREF1058_RS17910 0.30 +0.5
303,377 + HMPREF1058_RS17910 0.59 +1.2
303,453 - HMPREF1058_RS17910 0.82 +0.0
303,601 + +0.4
303,663 - -2.0
303,671 - -2.6
303,680 + -2.0
303,721 - +0.0
303,799 + HMPREF1058_RS17905 0.22 +0.0
303,817 + HMPREF1058_RS17905 0.26 -0.8
303,818 - HMPREF1058_RS17905 0.26 -1.0
303,818 - HMPREF1058_RS17905 0.26 +0.8
303,865 + HMPREF1058_RS17905 0.36 +0.6
303,865 + HMPREF1058_RS17905 0.36 -3.1
303,866 - HMPREF1058_RS17905 0.36 +0.2
303,868 + HMPREF1058_RS17905 0.36 -1.0
303,868 + HMPREF1058_RS17905 0.36 +0.7
303,868 + HMPREF1058_RS17905 0.36 -3.6
303,869 - HMPREF1058_RS17905 0.36 -2.2
303,872 + HMPREF1058_RS17905 0.37 -1.2
303,873 - HMPREF1058_RS17905 0.37 -2.3
303,877 + HMPREF1058_RS17905 0.38 -0.4
303,878 - HMPREF1058_RS17905 0.38 -2.1
303,878 - HMPREF1058_RS17905 0.38 -2.8
303,953 - HMPREF1058_RS17905 0.53 -1.6
303,956 + HMPREF1058_RS17905 0.54 -2.0
303,957 - HMPREF1058_RS17905 0.54 +0.6
304,136 + +1.4
304,152 + +1.0
304,153 - -0.1
304,153 - +0.6
304,153 - +0.5
304,164 + -1.5
304,189 + +5.0
304,238 - -0.4
304,383 + HMPREF1058_RS17900 0.25 -2.1
304,384 - HMPREF1058_RS17900 0.25 -0.6
304,401 - HMPREF1058_RS17900 0.27 +1.1
304,405 - HMPREF1058_RS17900 0.28 +0.0
304,407 + HMPREF1058_RS17900 0.28 -0.1
304,409 + HMPREF1058_RS17900 0.28 -0.6
304,421 + HMPREF1058_RS17900 0.30 -0.6
304,421 + HMPREF1058_RS17900 0.30 -2.3
304,421 + HMPREF1058_RS17900 0.30 -0.4
304,422 - HMPREF1058_RS17900 0.30 -2.1
304,422 - HMPREF1058_RS17900 0.30 +1.1
304,426 + HMPREF1058_RS17900 0.31 +0.9
304,439 - HMPREF1058_RS17900 0.32 +0.5
304,442 - HMPREF1058_RS17900 0.33 +0.2
304,474 - HMPREF1058_RS17900 0.37 +0.6
304,497 - HMPREF1058_RS17900 0.41 -1.8
304,623 + HMPREF1058_RS17900 0.58 +0.6
304,645 + HMPREF1058_RS17900 0.61 -0.9
304,677 + HMPREF1058_RS17900 0.66 -1.0
304,677 + HMPREF1058_RS17900 0.66 -1.0
304,677 + HMPREF1058_RS17900 0.66 +0.8
304,680 - HMPREF1058_RS17900 0.66 +0.6
304,681 + HMPREF1058_RS17900 0.66 +0.4
304,681 + HMPREF1058_RS17900 0.66 +0.6
304,726 - HMPREF1058_RS17900 0.73 +1.2
304,729 - HMPREF1058_RS17900 0.73 -2.0
304,744 + HMPREF1058_RS17900 0.75 -0.7
304,745 - HMPREF1058_RS17900 0.75 -1.0
304,763 - HMPREF1058_RS17900 0.78 -3.0
304,767 + HMPREF1058_RS17900 0.78 -0.6
304,768 - HMPREF1058_RS17900 0.78 -2.0
304,827 - HMPREF1058_RS17900 0.87 -1.0
304,855 + -0.4
304,920 + -0.4
304,921 - +0.6
305,009 - -0.1
305,011 + +1.4
305,084 + +0.7
305,084 + +2.8
305,084 + -1.6
305,108 + +0.3

Or see this region's nucleotide sequence