Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10515 and HMPREF1058_RS10510 are separated by 2 nucleotides HMPREF1058_RS10510 and HMPREF1058_RS10505 are separated by 171 nucleotides
HMPREF1058_RS10515: HMPREF1058_RS10515 - tRNA 2-thiouridine(34) synthase MnmA, at 648,915 to 649,970
_RS10515
HMPREF1058_RS10510: HMPREF1058_RS10510 - virulence RhuM family protein, at 649,973 to 650,443
_RS10510
HMPREF1058_RS10505: HMPREF1058_RS10505 - DUF4981 domain-containing protein, at 650,615 to 653,944
_RS10505
Position (kb) 649
650
651 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 649.009 kb on - strand at 649.009 kb on - strand at 649.071 kb on + strand, within HMPREF1058_RS10515 at 649.072 kb on - strand, within HMPREF1058_RS10515 at 649.072 kb on - strand, within HMPREF1058_RS10515 at 649.233 kb on + strand, within HMPREF1058_RS10515 at 649.490 kb on + strand, within HMPREF1058_RS10515 at 649.490 kb on + strand, within HMPREF1058_RS10515 at 649.491 kb on - strand, within HMPREF1058_RS10515 at 649.491 kb on - strand, within HMPREF1058_RS10515 at 649.601 kb on - strand, within HMPREF1058_RS10515 at 649.601 kb on - strand, within HMPREF1058_RS10515 at 649.669 kb on + strand, within HMPREF1058_RS10515 at 649.669 kb on + strand, within HMPREF1058_RS10515 at 649.670 kb on - strand, within HMPREF1058_RS10515 at 649.713 kb on - strand, within HMPREF1058_RS10515 at 649.713 kb on - strand, within HMPREF1058_RS10515 at 649.768 kb on + strand, within HMPREF1058_RS10515 at 649.769 kb on - strand at 649.769 kb on - strand, within HMPREF1058_RS10515 at 649.847 kb on - strand, within HMPREF1058_RS10515 at 649.975 kb on - strand at 649.993 kb on + strand at 650.069 kb on + strand, within HMPREF1058_RS10510 at 650.070 kb on - strand, within HMPREF1058_RS10510 at 650.084 kb on + strand, within HMPREF1058_RS10510 at 650.085 kb on - strand, within HMPREF1058_RS10510 at 650.188 kb on + strand, within HMPREF1058_RS10510 at 650.189 kb on - strand, within HMPREF1058_RS10510 at 650.191 kb on - strand, within HMPREF1058_RS10510 at 650.194 kb on - strand, within HMPREF1058_RS10510 at 650.298 kb on - strand, within HMPREF1058_RS10510 at 650.339 kb on + strand, within HMPREF1058_RS10510 at 650.343 kb on - strand, within HMPREF1058_RS10510 at 650.416 kb on - strand at 650.420 kb on + strand at 650.479 kb on - strand at 650.549 kb on + strand at 650.549 kb on + strand at 650.578 kb on + strand at 650.579 kb on - strand at 650.587 kb on + strand at 650.608 kb on + strand at 650.737 kb on + strand at 650.737 kb on + strand at 650.738 kb on - strand at 650.738 kb on - strand at 650.741 kb on + strand at 650.742 kb on - strand at 650.793 kb on - strand at 650.793 kb on - strand at 650.873 kb on - strand at 650.946 kb on - strand at 651.024 kb on + strand, within HMPREF1058_RS10505 at 651.025 kb on - strand, within HMPREF1058_RS10505 at 651.025 kb on - strand, within HMPREF1058_RS10505 at 651.025 kb on - strand, within HMPREF1058_RS10505 at 651.096 kb on + strand, within HMPREF1058_RS10505 at 651.241 kb on + strand, within HMPREF1058_RS10505 at 651.241 kb on + strand, within HMPREF1058_RS10505 at 651.287 kb on - strand, within HMPREF1058_RS10505 at 651.322 kb on - strand, within HMPREF1058_RS10505 at 651.328 kb on + strand, within HMPREF1058_RS10505 at 651.366 kb on + strand, within HMPREF1058_RS10505 at 651.378 kb on - strand, within HMPREF1058_RS10505 at 651.380 kb on + strand, within HMPREF1058_RS10505 at 651.381 kb on - strand, within HMPREF1058_RS10505 at 651.409 kb on + strand, within HMPREF1058_RS10505
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 remove 649,009 - -0.4 649,009 - +0.7 649,071 + HMPREF1058_RS10515 0.15 -1.4 649,072 - HMPREF1058_RS10515 0.15 -1.1 649,072 - HMPREF1058_RS10515 0.15 -1.1 649,233 + HMPREF1058_RS10515 0.30 +1.2 649,490 + HMPREF1058_RS10515 0.54 -0.2 649,490 + HMPREF1058_RS10515 0.54 -0.4 649,491 - HMPREF1058_RS10515 0.55 +0.2 649,491 - HMPREF1058_RS10515 0.55 -0.7 649,601 - HMPREF1058_RS10515 0.65 -1.7 649,601 - HMPREF1058_RS10515 0.65 -1.1 649,669 + HMPREF1058_RS10515 0.71 -0.6 649,669 + HMPREF1058_RS10515 0.71 +1.2 649,670 - HMPREF1058_RS10515 0.71 +0.3 649,713 - HMPREF1058_RS10515 0.76 -0.6 649,713 - HMPREF1058_RS10515 0.76 -0.5 649,768 + HMPREF1058_RS10515 0.81 -1.1 649,769 - -2.1 649,769 - HMPREF1058_RS10515 0.81 +0.5 649,847 - HMPREF1058_RS10515 0.88 +0.4 649,975 - +0.7 649,993 + +0.5 650,069 + HMPREF1058_RS10510 0.20 -0.1 650,070 - HMPREF1058_RS10510 0.21 +0.6 650,084 + HMPREF1058_RS10510 0.24 -0.7 650,085 - HMPREF1058_RS10510 0.24 +1.9 650,188 + HMPREF1058_RS10510 0.46 +1.7 650,189 - HMPREF1058_RS10510 0.46 +0.8 650,191 - HMPREF1058_RS10510 0.46 -2.0 650,194 - HMPREF1058_RS10510 0.47 -1.5 650,298 - HMPREF1058_RS10510 0.69 -0.1 650,339 + HMPREF1058_RS10510 0.78 +0.2 650,343 - HMPREF1058_RS10510 0.79 +3.0 650,416 - +0.0 650,420 + -2.1 650,479 - -0.1 650,549 + +0.1 650,549 + -0.5 650,578 + -2.1 650,579 - -0.7 650,587 + +0.4 650,608 + -0.3 650,737 + -2.7 650,737 + +1.5 650,738 - +0.6 650,738 - -0.1 650,741 + -0.5 650,742 - +1.0 650,793 - +0.6 650,793 - +0.1 650,873 - +0.2 650,946 - +4.9 651,024 + HMPREF1058_RS10505 0.12 +0.9 651,025 - HMPREF1058_RS10505 0.12 +0.1 651,025 - HMPREF1058_RS10505 0.12 +0.8 651,025 - HMPREF1058_RS10505 0.12 -3.9 651,096 + HMPREF1058_RS10505 0.14 -0.4 651,241 + HMPREF1058_RS10505 0.19 -0.7 651,241 + HMPREF1058_RS10505 0.19 +0.6 651,287 - HMPREF1058_RS10505 0.20 +0.9 651,322 - HMPREF1058_RS10505 0.21 -0.3 651,328 + HMPREF1058_RS10505 0.21 -2.9 651,366 + HMPREF1058_RS10505 0.23 +0.7 651,378 - HMPREF1058_RS10505 0.23 +0.2 651,380 + HMPREF1058_RS10505 0.23 -0.5 651,381 - HMPREF1058_RS10505 0.23 -0.5 651,409 + HMPREF1058_RS10505 0.24 -1.1
Or see this region's nucleotide sequence