Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09580 and HMPREF1058_RS09575 are separated by 70 nucleotides HMPREF1058_RS09575 and HMPREF1058_RS09570 are separated by 16 nucleotides HMPREF1058_RS09570 and HMPREF1058_RS0119695 are separated by 353 nucleotides HMPREF1058_RS0119695 and HMPREF1058_RS09565 are separated by 79 nucleotides HMPREF1058_RS09565 and HMPREF1058_RS0119700 are separated by 54 nucleotides HMPREF1058_RS0119700 and HMPREF1058_RS09560 are separated by 223 nucleotides
HMPREF1058_RS09580: HMPREF1058_RS09580 - aldo/keto reductase, at 842,220 to 843,212
_RS09580
HMPREF1058_RS09575: HMPREF1058_RS09575 - tRNA-Gly, at 843,283 to 843,355
_RS09575
HMPREF1058_RS09570: HMPREF1058_RS09570 - tRNA-Leu, at 843,372 to 843,456
_RS09570
HMPREF1058_RS0119695: HMPREF1058_RS0119695 - DNA-3-methyladenine glycosylase I, at 843,810 to 844,022
_RS0119695
HMPREF1058_RS09565: HMPREF1058_RS09565 - IS256 family transposase, at 844,102 to 845,334
_RS09565
HMPREF1058_RS0119700: HMPREF1058_RS0119700 - DNA-3-methyladenine glycosylase I, at 845,389 to 845,766
_RS0119700
HMPREF1058_RS09560: HMPREF1058_RS09560 - TonB-dependent receptor, at 845,990 to 848,377
_RS09560
Position (kb) 844
845
846 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 843.464 kb on + strand at 843.521 kb on - strand at 843.585 kb on + strand at 843.586 kb on - strand at 843.672 kb on - strand at 843.719 kb on + strand at 843.719 kb on + strand at 843.719 kb on + strand at 843.744 kb on + strand at 843.783 kb on + strand at 843.803 kb on - strand at 843.811 kb on + strand at 843.833 kb on + strand, within HMPREF1058_RS0119695 at 843.834 kb on - strand, within HMPREF1058_RS0119695 at 844.026 kb on - strand at 845.408 kb on + strand at 845.409 kb on - strand at 845.409 kb on - strand at 845.437 kb on + strand, within HMPREF1058_RS0119700 at 845.450 kb on - strand, within HMPREF1058_RS0119700 at 845.548 kb on + strand, within HMPREF1058_RS0119700 at 845.580 kb on + strand, within HMPREF1058_RS0119700 at 845.601 kb on + strand, within HMPREF1058_RS0119700 at 845.621 kb on - strand, within HMPREF1058_RS0119700 at 845.644 kb on + strand, within HMPREF1058_RS0119700 at 845.705 kb on + strand, within HMPREF1058_RS0119700 at 845.705 kb on + strand, within HMPREF1058_RS0119700 at 845.757 kb on + strand at 845.766 kb on + strand at 845.776 kb on - strand at 845.787 kb on - strand at 845.835 kb on - strand at 845.835 kb on - strand at 845.846 kb on + strand at 845.850 kb on + strand at 845.856 kb on + strand at 845.871 kb on + strand at 845.872 kb on - strand at 845.875 kb on - strand at 845.876 kb on + strand at 845.877 kb on - strand at 845.878 kb on + strand at 845.878 kb on + strand at 845.878 kb on + strand at 845.879 kb on - strand at 845.879 kb on - strand at 845.879 kb on - strand at 845.881 kb on - strand at 845.909 kb on + strand at 845.982 kb on - strand at 846.056 kb on - strand at 846.056 kb on - strand at 846.156 kb on - strand at 846.181 kb on + strand at 846.182 kb on - strand at 846.182 kb on - strand at 846.185 kb on + strand at 846.186 kb on - strand at 846.186 kb on - strand at 846.186 kb on - strand at 846.242 kb on - strand, within HMPREF1058_RS09560 at 846.242 kb on - strand, within HMPREF1058_RS09560 at 846.249 kb on + strand, within HMPREF1058_RS09560
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 remove 843,464 + +0.2 843,521 - +0.4 843,585 + +1.0 843,586 - -2.5 843,672 - -0.1 843,719 + -4.1 843,719 + +0.0 843,719 + -0.2 843,744 + +1.9 843,783 + +0.5 843,803 - +0.2 843,811 + +0.2 843,833 + HMPREF1058_RS0119695 0.11 -0.2 843,834 - HMPREF1058_RS0119695 0.11 -0.8 844,026 - -1.6 845,408 + -0.2 845,409 - -0.5 845,409 - +1.5 845,437 + HMPREF1058_RS0119700 0.13 -3.5 845,450 - HMPREF1058_RS0119700 0.16 +3.2 845,548 + HMPREF1058_RS0119700 0.42 -1.8 845,580 + HMPREF1058_RS0119700 0.51 -1.2 845,601 + HMPREF1058_RS0119700 0.56 +1.0 845,621 - HMPREF1058_RS0119700 0.61 +1.6 845,644 + HMPREF1058_RS0119700 0.67 +2.0 845,705 + HMPREF1058_RS0119700 0.84 -0.8 845,705 + HMPREF1058_RS0119700 0.84 +0.2 845,757 + +0.2 845,766 + -3.8 845,776 - +0.4 845,787 - +1.3 845,835 - -0.7 845,835 - +0.7 845,846 + +1.5 845,850 + -0.6 845,856 + -0.8 845,871 + +1.7 845,872 - +0.8 845,875 - +0.0 845,876 + -2.2 845,877 - +0.1 845,878 + -0.2 845,878 + -0.8 845,878 + +0.1 845,879 - -3.6 845,879 - +0.0 845,879 - +0.7 845,881 - +0.8 845,909 + -0.9 845,982 - +0.1 846,056 - -2.5 846,056 - -0.1 846,156 - -0.2 846,181 + +0.4 846,182 - +0.3 846,182 - -1.0 846,185 + +0.2 846,186 - +0.3 846,186 - +0.8 846,186 - +0.2 846,242 - HMPREF1058_RS09560 0.11 -0.4 846,242 - HMPREF1058_RS09560 0.11 -0.2 846,249 + HMPREF1058_RS09560 0.11 -0.5
Or see this region's nucleotide sequence