Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09050 and HMPREF1058_RS09045 are separated by 140 nucleotides HMPREF1058_RS09045 and HMPREF1058_RS09040 are separated by 95 nucleotides
HMPREF1058_RS09050: HMPREF1058_RS09050 - hypothetical protein, at 956,382 to 957,221
_RS09050
HMPREF1058_RS09045: HMPREF1058_RS09045 - leucyl/phenylalanyl-tRNA--protein transferase, at 957,362 to 958,015
_RS09045
HMPREF1058_RS09040: HMPREF1058_RS09040 - AAA family ATPase, at 958,111 to 960,339
_RS09040
Position (kb) 957
958
959 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 956.427 kb on + strand at 956.520 kb on + strand, within HMPREF1058_RS09050 at 956.522 kb on + strand, within HMPREF1058_RS09050 at 956.567 kb on - strand, within HMPREF1058_RS09050 at 956.597 kb on - strand, within HMPREF1058_RS09050 at 956.602 kb on + strand, within HMPREF1058_RS09050 at 956.602 kb on + strand, within HMPREF1058_RS09050 at 956.603 kb on - strand, within HMPREF1058_RS09050 at 956.603 kb on - strand, within HMPREF1058_RS09050 at 956.608 kb on - strand, within HMPREF1058_RS09050 at 956.625 kb on - strand, within HMPREF1058_RS09050 at 956.625 kb on - strand, within HMPREF1058_RS09050 at 956.625 kb on - strand, within HMPREF1058_RS09050 at 956.659 kb on + strand, within HMPREF1058_RS09050 at 956.659 kb on + strand, within HMPREF1058_RS09050 at 956.660 kb on - strand, within HMPREF1058_RS09050 at 956.745 kb on - strand, within HMPREF1058_RS09050 at 956.795 kb on + strand, within HMPREF1058_RS09050 at 956.804 kb on + strand, within HMPREF1058_RS09050 at 956.828 kb on + strand, within HMPREF1058_RS09050 at 956.829 kb on - strand, within HMPREF1058_RS09050 at 956.830 kb on + strand, within HMPREF1058_RS09050 at 956.851 kb on + strand, within HMPREF1058_RS09050 at 956.863 kb on + strand, within HMPREF1058_RS09050 at 956.863 kb on + strand, within HMPREF1058_RS09050 at 956.864 kb on - strand, within HMPREF1058_RS09050 at 956.873 kb on - strand, within HMPREF1058_RS09050 at 956.873 kb on - strand, within HMPREF1058_RS09050 at 956.891 kb on - strand, within HMPREF1058_RS09050 at 956.926 kb on + strand, within HMPREF1058_RS09050 at 956.927 kb on - strand, within HMPREF1058_RS09050 at 956.953 kb on - strand, within HMPREF1058_RS09050 at 956.991 kb on + strand, within HMPREF1058_RS09050 at 957.054 kb on + strand, within HMPREF1058_RS09050 at 957.096 kb on + strand, within HMPREF1058_RS09050 at 957.097 kb on - strand, within HMPREF1058_RS09050 at 957.132 kb on - strand, within HMPREF1058_RS09050 at 957.140 kb on + strand at 957.188 kb on + strand at 957.210 kb on + strand at 957.211 kb on - strand at 957.284 kb on - strand at 957.310 kb on - strand at 957.310 kb on - strand at 957.312 kb on - strand at 957.390 kb on + strand at 957.390 kb on + strand at 957.391 kb on - strand at 957.397 kb on + strand at 957.397 kb on + strand at 957.399 kb on + strand at 957.400 kb on - strand at 957.400 kb on - strand at 957.413 kb on + strand at 957.413 kb on + strand at 957.414 kb on - strand at 957.417 kb on + strand at 957.417 kb on + strand at 957.438 kb on - strand, within HMPREF1058_RS09045 at 957.468 kb on - strand, within HMPREF1058_RS09045 at 957.468 kb on - strand, within HMPREF1058_RS09045 at 957.504 kb on + strand, within HMPREF1058_RS09045 at 957.508 kb on + strand, within HMPREF1058_RS09045 at 957.618 kb on - strand, within HMPREF1058_RS09045 at 957.788 kb on - strand, within HMPREF1058_RS09045 at 957.857 kb on + strand, within HMPREF1058_RS09045 at 957.879 kb on + strand, within HMPREF1058_RS09045 at 957.879 kb on + strand, within HMPREF1058_RS09045 at 957.891 kb on - strand, within HMPREF1058_RS09045 at 958.015 kb on + strand at 958.040 kb on + strand at 958.040 kb on + strand at 958.040 kb on + strand at 958.041 kb on - strand at 958.041 kb on - strand at 958.046 kb on - strand at 958.104 kb on - strand at 958.124 kb on - strand at 958.167 kb on + strand at 958.167 kb on + strand at 958.206 kb on + strand at 958.206 kb on + strand at 958.230 kb on + strand at 958.230 kb on + strand at 958.276 kb on + strand at 958.294 kb on - strand at 958.296 kb on - strand at 958.296 kb on - strand at 958.321 kb on + strand at 958.321 kb on + strand at 958.399 kb on - strand, within HMPREF1058_RS09040 at 958.507 kb on + strand, within HMPREF1058_RS09040 at 958.554 kb on + strand, within HMPREF1058_RS09040 at 958.554 kb on + strand, within HMPREF1058_RS09040 at 958.555 kb on - strand, within HMPREF1058_RS09040 at 958.555 kb on - strand, within HMPREF1058_RS09040 at 958.558 kb on + strand, within HMPREF1058_RS09040 at 958.558 kb on + strand, within HMPREF1058_RS09040 at 958.558 kb on + strand, within HMPREF1058_RS09040 at 958.559 kb on - strand, within HMPREF1058_RS09040 at 958.559 kb on - strand, within HMPREF1058_RS09040 at 958.560 kb on + strand, within HMPREF1058_RS09040 at 958.639 kb on + strand, within HMPREF1058_RS09040 at 958.639 kb on + strand, within HMPREF1058_RS09040 at 958.640 kb on - strand, within HMPREF1058_RS09040 at 958.640 kb on - strand, within HMPREF1058_RS09040 at 958.735 kb on + strand, within HMPREF1058_RS09040 at 958.735 kb on + strand, within HMPREF1058_RS09040 at 958.736 kb on - strand, within HMPREF1058_RS09040 at 958.736 kb on - strand, within HMPREF1058_RS09040 at 958.737 kb on + strand, within HMPREF1058_RS09040 at 958.818 kb on + strand, within HMPREF1058_RS09040 at 958.819 kb on - strand, within HMPREF1058_RS09040 at 958.838 kb on - strand, within HMPREF1058_RS09040 at 959.000 kb on + strand, within HMPREF1058_RS09040 at 959.001 kb on - strand, within HMPREF1058_RS09040
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 remove 956,427 + -4.9 956,520 + HMPREF1058_RS09050 0.16 -1.5 956,522 + HMPREF1058_RS09050 0.17 +0.8 956,567 - HMPREF1058_RS09050 0.22 -0.8 956,597 - HMPREF1058_RS09050 0.26 -2.2 956,602 + HMPREF1058_RS09050 0.26 -1.2 956,602 + HMPREF1058_RS09050 0.26 -0.5 956,603 - HMPREF1058_RS09050 0.26 +0.4 956,603 - HMPREF1058_RS09050 0.26 -1.0 956,608 - HMPREF1058_RS09050 0.27 -0.6 956,625 - HMPREF1058_RS09050 0.29 +1.5 956,625 - HMPREF1058_RS09050 0.29 -1.3 956,625 - HMPREF1058_RS09050 0.29 -1.3 956,659 + HMPREF1058_RS09050 0.33 +0.0 956,659 + HMPREF1058_RS09050 0.33 -2.2 956,660 - HMPREF1058_RS09050 0.33 -0.4 956,745 - HMPREF1058_RS09050 0.43 +0.8 956,795 + HMPREF1058_RS09050 0.49 -1.5 956,804 + HMPREF1058_RS09050 0.50 -1.2 956,828 + HMPREF1058_RS09050 0.53 +0.6 956,829 - HMPREF1058_RS09050 0.53 -0.7 956,830 + HMPREF1058_RS09050 0.53 +0.3 956,851 + HMPREF1058_RS09050 0.56 -2.5 956,863 + HMPREF1058_RS09050 0.57 -0.4 956,863 + HMPREF1058_RS09050 0.57 -1.2 956,864 - HMPREF1058_RS09050 0.57 +0.4 956,873 - HMPREF1058_RS09050 0.58 +2.6 956,873 - HMPREF1058_RS09050 0.58 +1.4 956,891 - HMPREF1058_RS09050 0.61 +0.3 956,926 + HMPREF1058_RS09050 0.65 -3.0 956,927 - HMPREF1058_RS09050 0.65 -0.6 956,953 - HMPREF1058_RS09050 0.68 -0.3 956,991 + HMPREF1058_RS09050 0.72 -3.2 957,054 + HMPREF1058_RS09050 0.80 -3.1 957,096 + HMPREF1058_RS09050 0.85 +2.3 957,097 - HMPREF1058_RS09050 0.85 +2.5 957,132 - HMPREF1058_RS09050 0.89 -0.9 957,140 + -0.3 957,188 + -0.0 957,210 + -0.6 957,211 - +2.8 957,284 - -0.6 957,310 - +0.7 957,310 - -1.6 957,312 - +0.4 957,390 + +0.4 957,390 + -0.7 957,391 - -1.6 957,397 + -0.9 957,397 + +2.2 957,399 + +0.6 957,400 - -1.8 957,400 - +0.5 957,413 + +0.3 957,413 + +0.4 957,414 - -2.2 957,417 + -1.8 957,417 + +0.8 957,438 - HMPREF1058_RS09045 0.12 +1.0 957,468 - HMPREF1058_RS09045 0.16 -0.5 957,468 - HMPREF1058_RS09045 0.16 -0.1 957,504 + HMPREF1058_RS09045 0.22 -3.6 957,508 + HMPREF1058_RS09045 0.22 -0.3 957,618 - HMPREF1058_RS09045 0.39 -0.2 957,788 - HMPREF1058_RS09045 0.65 +2.2 957,857 + HMPREF1058_RS09045 0.76 +0.2 957,879 + HMPREF1058_RS09045 0.79 -0.1 957,879 + HMPREF1058_RS09045 0.79 +0.1 957,891 - HMPREF1058_RS09045 0.81 -3.9 958,015 + -2.6 958,040 + -3.2 958,040 + +2.1 958,040 + -2.0 958,041 - +0.1 958,041 - -2.0 958,046 - -2.2 958,104 - -1.7 958,124 - -0.2 958,167 + -1.3 958,167 + +2.4 958,206 + +0.7 958,206 + +0.8 958,230 + +5.6 958,230 + +2.3 958,276 + +0.7 958,294 - -1.7 958,296 - +1.0 958,296 - +0.4 958,321 + -0.2 958,321 + -0.3 958,399 - HMPREF1058_RS09040 0.13 -0.2 958,507 + HMPREF1058_RS09040 0.18 +0.6 958,554 + HMPREF1058_RS09040 0.20 +3.4 958,554 + HMPREF1058_RS09040 0.20 +0.0 958,555 - HMPREF1058_RS09040 0.20 +0.5 958,555 - HMPREF1058_RS09040 0.20 +1.9 958,558 + HMPREF1058_RS09040 0.20 -2.7 958,558 + HMPREF1058_RS09040 0.20 +0.3 958,558 + HMPREF1058_RS09040 0.20 -3.0 958,559 - HMPREF1058_RS09040 0.20 -0.5 958,559 - HMPREF1058_RS09040 0.20 -1.0 958,560 + HMPREF1058_RS09040 0.20 +0.0 958,639 + HMPREF1058_RS09040 0.24 -0.0 958,639 + HMPREF1058_RS09040 0.24 -1.3 958,640 - HMPREF1058_RS09040 0.24 +4.1 958,640 - HMPREF1058_RS09040 0.24 +1.1 958,735 + HMPREF1058_RS09040 0.28 -0.8 958,735 + HMPREF1058_RS09040 0.28 -2.2 958,736 - HMPREF1058_RS09040 0.28 +0.6 958,736 - HMPREF1058_RS09040 0.28 -0.2 958,737 + HMPREF1058_RS09040 0.28 +1.6 958,818 + HMPREF1058_RS09040 0.32 -0.7 958,819 - HMPREF1058_RS09040 0.32 +0.6 958,838 - HMPREF1058_RS09040 0.33 +3.3 959,000 + HMPREF1058_RS09040 0.40 +0.8 959,001 - HMPREF1058_RS09040 0.40 -0.5
Or see this region's nucleotide sequence