Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03490 and HMPREF1058_RS03485 are separated by 185 nucleotides HMPREF1058_RS03485 and HMPREF1058_RS03480 are separated by 3 nucleotides
HMPREF1058_RS03490: HMPREF1058_RS03490 - glycosyltransferase family 4 protein, at 269,575 to 270,663
_RS03490
HMPREF1058_RS03485: HMPREF1058_RS03485 - RloB domain-containing protein, at 270,849 to 271,484
_RS03485
HMPREF1058_RS03480: HMPREF1058_RS03480 - ATP-binding protein, at 271,488 to 272,708
_RS03480
Position (kb) 270
271
272 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 269.991 kb on + strand, within HMPREF1058_RS03490 at 269.991 kb on + strand, within HMPREF1058_RS03490 at 269.991 kb on + strand, within HMPREF1058_RS03490 at 269.992 kb on - strand, within HMPREF1058_RS03490 at 270.077 kb on + strand, within HMPREF1058_RS03490 at 270.226 kb on + strand, within HMPREF1058_RS03490 at 270.227 kb on - strand, within HMPREF1058_RS03490 at 270.308 kb on + strand, within HMPREF1058_RS03490 at 270.461 kb on + strand, within HMPREF1058_RS03490 at 270.653 kb on - strand at 270.656 kb on - strand at 270.758 kb on - strand at 270.881 kb on + strand at 270.893 kb on + strand at 270.894 kb on - strand at 270.999 kb on - strand, within HMPREF1058_RS03485 at 271.043 kb on + strand, within HMPREF1058_RS03485 at 271.234 kb on + strand, within HMPREF1058_RS03485 at 271.235 kb on - strand, within HMPREF1058_RS03485 at 271.267 kb on - strand, within HMPREF1058_RS03485 at 271.288 kb on - strand, within HMPREF1058_RS03485 at 271.597 kb on + strand at 271.677 kb on - strand, within HMPREF1058_RS03480 at 271.766 kb on + strand, within HMPREF1058_RS03480 at 271.807 kb on - strand, within HMPREF1058_RS03480 at 271.939 kb on + strand, within HMPREF1058_RS03480 at 271.968 kb on - strand, within HMPREF1058_RS03480 at 272.172 kb on + strand, within HMPREF1058_RS03480 at 272.172 kb on + strand, within HMPREF1058_RS03480 at 272.173 kb on - strand, within HMPREF1058_RS03480 at 272.268 kb on + strand, within HMPREF1058_RS03480
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 remove 269,991 + HMPREF1058_RS03490 0.38 -1.2 269,991 + HMPREF1058_RS03490 0.38 -2.0 269,991 + HMPREF1058_RS03490 0.38 -2.3 269,992 - HMPREF1058_RS03490 0.38 -2.0 270,077 + HMPREF1058_RS03490 0.46 -1.3 270,226 + HMPREF1058_RS03490 0.60 +2.0 270,227 - HMPREF1058_RS03490 0.60 -2.3 270,308 + HMPREF1058_RS03490 0.67 +4.5 270,461 + HMPREF1058_RS03490 0.81 -1.3 270,653 - -4.2 270,656 - -3.5 270,758 - -3.7 270,881 + +1.3 270,893 + -0.7 270,894 - -2.1 270,999 - HMPREF1058_RS03485 0.24 -0.7 271,043 + HMPREF1058_RS03485 0.31 +0.3 271,234 + HMPREF1058_RS03485 0.61 +0.3 271,235 - HMPREF1058_RS03485 0.61 +1.0 271,267 - HMPREF1058_RS03485 0.66 -1.3 271,288 - HMPREF1058_RS03485 0.69 +0.8 271,597 + -0.1 271,677 - HMPREF1058_RS03480 0.15 +1.6 271,766 + HMPREF1058_RS03480 0.23 +0.2 271,807 - HMPREF1058_RS03480 0.26 +2.9 271,939 + HMPREF1058_RS03480 0.37 -2.3 271,968 - HMPREF1058_RS03480 0.39 -0.5 272,172 + HMPREF1058_RS03480 0.56 +0.1 272,172 + HMPREF1058_RS03480 0.56 -0.9 272,173 - HMPREF1058_RS03480 0.56 +0.3 272,268 + HMPREF1058_RS03480 0.64 -0.3
Or see this region's nucleotide sequence