Experiment: 7H9 with Tetrazolium violet 0.065 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0622 and Rv0623 are separated by 92 nucleotides Rv0623 and Rv0624 overlap by 1 nucleotides Rv0624 and Rv0625c are separated by 93 nucleotides
Rv0622: Rv0622 - Possible membrane protein, at 715,370 to 716,317
Rv0622
Rv0623: Rv0623 - Possible antitoxin VapB30, at 716,410 to 716,664
Rv0623
Rv0624: Rv0624 - Possible toxin VapC30. Contains PIN domain., at 716,664 to 717,059
Rv0624
Rv0625c: Rv0625c - Probable conserved transmembrane protein, at 717,153 to 717,893
Rv0625c
Position (kb) 716
717 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 715.437 kb on - strand at 715.542 kb on - strand, within Rv0622 at 715.542 kb on - strand, within Rv0622 at 715.796 kb on + strand, within Rv0622 at 715.797 kb on - strand, within Rv0622 at 716.231 kb on + strand at 716.232 kb on - strand at 716.422 kb on - strand at 716.422 kb on - strand at 716.638 kb on + strand, within Rv0623 at 716.639 kb on - strand at 716.797 kb on + strand, within Rv0624 at 716.798 kb on - strand, within Rv0624 at 716.919 kb on + strand, within Rv0624 at 716.920 kb on - strand, within Rv0624 at 716.952 kb on + strand, within Rv0624 at 716.953 kb on - strand, within Rv0624 at 716.970 kb on + strand, within Rv0624 at 716.971 kb on - strand, within Rv0624 at 717.057 kb on + strand at 717.058 kb on - strand at 717.058 kb on - strand at 717.064 kb on + strand at 717.428 kb on - strand, within Rv0625c at 717.428 kb on - strand, within Rv0625c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Tetrazolium violet 0.065 mM remove 715,437 - -1.0 715,542 - Rv0622 0.18 -1.7 715,542 - Rv0622 0.18 +1.8 715,796 + Rv0622 0.45 -0.0 715,797 - Rv0622 0.45 -1.1 716,231 + -0.7 716,232 - -0.8 716,422 - +0.0 716,422 - -0.4 716,638 + Rv0623 0.89 -0.5 716,639 - -1.5 716,797 + Rv0624 0.34 -0.8 716,798 - Rv0624 0.34 -0.6 716,919 + Rv0624 0.64 +0.1 716,920 - Rv0624 0.65 +0.2 716,952 + Rv0624 0.73 -0.9 716,953 - Rv0624 0.73 +2.8 716,970 + Rv0624 0.77 -0.6 716,971 - Rv0624 0.78 -0.9 717,057 + +0.3 717,058 - -3.5 717,058 - -1.6 717,064 + +0.4 717,428 - Rv0625c 0.37 -0.3 717,428 - Rv0625c 0.37 +0.4
Or see this region's nucleotide sequence