Experiment: 7H9 with Dibucaine 0.21 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv2897c and Rv2898c overlap by 1 nucleotides Rv2898c and Rv2899c are separated by 247 nucleotides Rv2899c and Rv2900c overlap by 1 nucleotides
Rv2897c: Rv2897c - Conserved hypothetical protein, at 3,206,431 to 3,207,942
Rv2897c
Rv2898c: Rv2898c - Conserved hypothetical protein, at 3,207,942 to 3,208,328
Rv2898c
Rv2899c: Rv2899c - Possible FdhD protein homolog, at 3,208,576 to 3,209,406
Rv2899c
Rv2900c: Rv2900c - Possible formate dehydrogenase H FdhF (formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide) (formate dehydrogenase-H alpha subunit) (FDH-H), at 3,209,406 to 3,211,745
Rv2900c
Position (kb)
3208
3209
3210 Strain fitness (log2 ratio)
-2
-1
0
1 at 3208.262 kb on - strand, within Rv2898c at 3208.435 kb on - strand at 3208.485 kb on + strand at 3208.485 kb on + strand at 3208.578 kb on - strand at 3209.069 kb on + strand, within Rv2899c at 3209.139 kb on - strand, within Rv2899c at 3209.510 kb on - strand at 3209.540 kb on - strand at 3209.734 kb on + strand, within Rv2900c at 3209.734 kb on + strand, within Rv2900c at 3209.905 kb on + strand, within Rv2900c at 3209.906 kb on - strand, within Rv2900c at 3209.956 kb on + strand, within Rv2900c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Dibucaine 0.21 mM remove 3,208,262 - Rv2898c 0.83 +0.2 3,208,435 - -2.0 3,208,485 + -0.1 3,208,485 + +0.7 3,208,578 - -0.5 3,209,069 + Rv2899c 0.59 -1.0 3,209,139 - Rv2899c 0.68 -0.7 3,209,510 - -0.1 3,209,540 - -1.4 3,209,734 + Rv2900c 0.14 +1.0 3,209,734 + Rv2900c 0.14 -0.7 3,209,905 + Rv2900c 0.21 -0.0 3,209,906 - Rv2900c 0.21 +0.0 3,209,956 + Rv2900c 0.24 -0.4
Or see this region's nucleotide sequence