Experiment: 7H9 with Dibucaine 0.21 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0803 and Rv0804 overlap by 4 nucleotides Rv0804 and Rv0805 are separated by 120 nucleotides Rv0805 and Rv0806c overlap by 56 nucleotides
Rv0803: Rv0803 - Phosphoribosylformylglycinamidine synthase II PurL (FGAM synthase II), at 895,820 to 898,084
Rv0803
Rv0804: Rv0804 - Conserved hypothetical protein, at 898,081 to 898,710
Rv0804
Rv0805: Rv0805 - Class III cyclic nucleotide phosphodiesterase (cNMP PDE), at 898,831 to 899,787
Rv0805
Rv0806c: Rv0806c - Possible UDP-glucose-4-epimerase CpsY (galactowaldenase) (UDP-galactose-4-epimerase) (uridine diphosphate galactose-4-epimerase) (uridine diphospho-galactose-4-epimerase), at 899,732 to 901,330
Rv0806c
Position (kb) 898
899
900 Strain fitness (log2 ratio) -1
0
1
2
3 at 898.376 kb on + strand, within Rv0804 at 898.376 kb on + strand, within Rv0804 at 898.386 kb on + strand, within Rv0804 at 898.386 kb on - strand, within Rv0804 at 898.386 kb on - strand, within Rv0804 at 898.386 kb on - strand, within Rv0804 at 898.440 kb on + strand, within Rv0804 at 898.479 kb on - strand, within Rv0804 at 898.479 kb on - strand, within Rv0804 at 898.780 kb on - strand at 898.799 kb on + strand at 898.837 kb on - strand at 898.837 kb on - strand at 898.843 kb on - strand at 898.870 kb on + strand at 898.880 kb on + strand at 898.880 kb on + strand at 898.880 kb on + strand at 898.880 kb on + strand at 898.881 kb on - strand at 898.884 kb on + strand at 898.884 kb on + strand at 898.884 kb on + strand at 898.885 kb on - strand at 899.028 kb on + strand, within Rv0805 at 899.119 kb on - strand, within Rv0805 at 899.891 kb on - strand at 899.891 kb on - strand at 899.938 kb on + strand, within Rv0806c at 899.962 kb on - strand, within Rv0806c at 899.980 kb on - strand, within Rv0806c at 899.990 kb on - strand, within Rv0806c at 900.030 kb on + strand, within Rv0806c at 900.033 kb on + strand, within Rv0806c at 900.039 kb on + strand, within Rv0806c at 900.040 kb on - strand, within Rv0806c at 900.040 kb on - strand, within Rv0806c at 900.181 kb on + strand, within Rv0806c at 900.328 kb on + strand, within Rv0806c at 900.434 kb on - strand, within Rv0806c at 900.434 kb on - strand, within Rv0806c at 900.435 kb on + strand, within Rv0806c at 900.436 kb on - strand, within Rv0806c at 900.436 kb on - strand, within Rv0806c at 900.436 kb on - strand, within Rv0806c at 900.552 kb on - strand, within Rv0806c at 900.648 kb on + strand, within Rv0806c at 900.723 kb on - strand, within Rv0806c at 900.784 kb on - strand, within Rv0806c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Dibucaine 0.21 mM remove 898,376 + Rv0804 0.47 +1.9 898,376 + Rv0804 0.47 +0.8 898,386 + Rv0804 0.48 -0.4 898,386 - Rv0804 0.48 -0.6 898,386 - Rv0804 0.48 -0.1 898,386 - Rv0804 0.48 +0.6 898,440 + Rv0804 0.57 -0.9 898,479 - Rv0804 0.63 -1.5 898,479 - Rv0804 0.63 +0.0 898,780 - +0.5 898,799 + -0.2 898,837 - +1.5 898,837 - +1.9 898,843 - -0.4 898,870 + -1.0 898,880 + +0.6 898,880 + +1.7 898,880 + -0.2 898,880 + +0.3 898,881 - +1.4 898,884 + +1.3 898,884 + +0.5 898,884 + +3.5 898,885 - +0.1 899,028 + Rv0805 0.21 +1.9 899,119 - Rv0805 0.30 -0.9 899,891 - +1.1 899,891 - -0.4 899,938 + Rv0806c 0.13 -0.8 899,962 - Rv0806c 0.14 -0.2 899,980 - Rv0806c 0.16 -0.8 899,990 - Rv0806c 0.16 +0.9 900,030 + Rv0806c 0.19 -0.7 900,033 + Rv0806c 0.19 -0.4 900,039 + Rv0806c 0.19 -0.3 900,040 - Rv0806c 0.19 -0.8 900,040 - Rv0806c 0.19 +0.3 900,181 + Rv0806c 0.28 -1.3 900,328 + Rv0806c 0.37 +2.9 900,434 - Rv0806c 0.44 -0.5 900,434 - Rv0806c 0.44 +1.1 900,435 + Rv0806c 0.44 +0.1 900,436 - Rv0806c 0.44 -0.7 900,436 - Rv0806c 0.44 +0.1 900,436 - Rv0806c 0.44 +0.1 900,552 - Rv0806c 0.51 +1.7 900,648 + Rv0806c 0.57 -1.2 900,723 - Rv0806c 0.62 -0.3 900,784 - Rv0806c 0.66 +0.1
Or see this region's nucleotide sequence