Experiment: 7H9 with Phenazine methosulfate 0.0054 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0302 and Rv0303 overlap by 4 nucleotides Rv0303 and Rv0304c are separated by 7 nucleotides Rv0304c and Rv0305c are separated by 55 nucleotides
Rv0302: Rv0302 - Probable transcriptional regulatory protein (probably TetR/AcrR-family), at 364,605 to 365,237
Rv0302
Rv0303: Rv0303 - Probable dehydrogenase/reductase, at 365,234 to 366,142
Rv0303
Rv0304c: Rv0304c - PPE family protein PPE5, at 366,150 to 372,764
Rv0304c
Rv0305c: Rv0305c - PPE family protein PPE6, at 372,820 to 375,711
Rv0305c
Position (kb) 366
367
368
369
370
371
372
373 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 365.178 kb on + strand at 365.179 kb on - strand at 365.179 kb on - strand at 365.304 kb on + strand at 365.565 kb on + strand, within Rv0303 at 365.693 kb on + strand, within Rv0303 at 365.695 kb on + strand, within Rv0303 at 365.696 kb on - strand, within Rv0303 at 365.696 kb on - strand, within Rv0303 at 365.696 kb on - strand, within Rv0303 at 365.762 kb on + strand, within Rv0303 at 365.762 kb on + strand, within Rv0303 at 365.798 kb on + strand, within Rv0303 at 365.799 kb on - strand, within Rv0303 at 365.865 kb on + strand, within Rv0303 at 365.918 kb on + strand, within Rv0303 at 365.918 kb on + strand, within Rv0303 at 366.077 kb on + strand at 366.140 kb on + strand at 366.140 kb on + strand at 366.140 kb on + strand at 366.141 kb on - strand at 366.141 kb on - strand at 366.141 kb on - strand at 366.141 kb on - strand at 366.159 kb on - strand at 366.189 kb on - strand at 366.452 kb on - strand at 366.482 kb on - strand at 366.735 kb on - strand at 366.735 kb on - strand at 366.887 kb on + strand, within Rv0304c at 366.908 kb on - strand, within Rv0304c at 366.908 kb on - strand, within Rv0304c at 366.968 kb on - strand, within Rv0304c at 366.968 kb on - strand, within Rv0304c at 367.027 kb on + strand, within Rv0304c at 367.027 kb on + strand, within Rv0304c at 367.161 kb on - strand, within Rv0304c at 367.346 kb on - strand, within Rv0304c at 367.512 kb on + strand, within Rv0304c at 367.512 kb on + strand, within Rv0304c at 367.512 kb on + strand, within Rv0304c at 367.513 kb on - strand, within Rv0304c at 367.513 kb on - strand, within Rv0304c at 367.513 kb on - strand, within Rv0304c at 367.513 kb on - strand, within Rv0304c at 367.513 kb on - strand, within Rv0304c at 367.513 kb on - strand, within Rv0304c at 367.809 kb on + strand, within Rv0304c at 367.809 kb on + strand, within Rv0304c at 367.809 kb on + strand, within Rv0304c at 367.810 kb on - strand, within Rv0304c at 367.835 kb on - strand, within Rv0304c at 367.922 kb on - strand, within Rv0304c at 367.981 kb on + strand, within Rv0304c at 367.982 kb on - strand, within Rv0304c at 367.982 kb on - strand, within Rv0304c at 368.012 kb on - strand, within Rv0304c at 368.066 kb on + strand, within Rv0304c at 368.290 kb on - strand, within Rv0304c at 368.417 kb on + strand, within Rv0304c at 368.452 kb on + strand, within Rv0304c at 368.452 kb on + strand, within Rv0304c at 368.452 kb on + strand, within Rv0304c at 368.453 kb on - strand, within Rv0304c at 368.453 kb on - strand, within Rv0304c at 368.453 kb on - strand, within Rv0304c at 368.453 kb on - strand, within Rv0304c at 368.453 kb on - strand, within Rv0304c at 368.482 kb on + strand, within Rv0304c at 368.482 kb on + strand, within Rv0304c at 368.723 kb on - strand, within Rv0304c at 368.723 kb on - strand, within Rv0304c at 368.723 kb on - strand, within Rv0304c at 368.723 kb on - strand, within Rv0304c at 368.723 kb on - strand, within Rv0304c at 369.098 kb on + strand, within Rv0304c at 369.177 kb on + strand, within Rv0304c at 369.177 kb on + strand, within Rv0304c at 369.178 kb on - strand, within Rv0304c at 369.224 kb on + strand, within Rv0304c at 369.225 kb on - strand, within Rv0304c at 369.241 kb on + strand, within Rv0304c at 369.444 kb on - strand, within Rv0304c at 369.444 kb on - strand, within Rv0304c at 369.573 kb on - strand, within Rv0304c at 369.745 kb on + strand, within Rv0304c at 369.745 kb on + strand, within Rv0304c at 369.746 kb on - strand, within Rv0304c at 369.746 kb on - strand, within Rv0304c at 369.753 kb on + strand, within Rv0304c at 369.805 kb on + strand, within Rv0304c at 369.805 kb on + strand, within Rv0304c at 369.805 kb on + strand, within Rv0304c at 369.973 kb on + strand, within Rv0304c at 369.974 kb on - strand, within Rv0304c at 370.002 kb on - strand, within Rv0304c at 370.002 kb on - strand, within Rv0304c at 370.002 kb on - strand, within Rv0304c at 370.037 kb on - strand, within Rv0304c at 370.208 kb on + strand, within Rv0304c at 370.262 kb on + strand, within Rv0304c at 370.263 kb on - strand, within Rv0304c at 370.263 kb on - strand, within Rv0304c at 370.263 kb on - strand, within Rv0304c at 370.301 kb on + strand, within Rv0304c at 370.314 kb on + strand, within Rv0304c at 370.314 kb on + strand, within Rv0304c at 370.315 kb on - strand, within Rv0304c at 370.367 kb on + strand, within Rv0304c at 370.368 kb on - strand, within Rv0304c at 370.447 kb on + strand, within Rv0304c at 371.026 kb on - strand, within Rv0304c at 371.114 kb on - strand, within Rv0304c at 371.281 kb on + strand, within Rv0304c at 371.281 kb on + strand, within Rv0304c at 371.281 kb on + strand, within Rv0304c at 371.282 kb on - strand, within Rv0304c at 371.516 kb on + strand, within Rv0304c at 371.610 kb on - strand, within Rv0304c at 371.687 kb on + strand, within Rv0304c at 371.800 kb on + strand, within Rv0304c at 371.811 kb on + strand, within Rv0304c at 371.812 kb on - strand, within Rv0304c at 371.812 kb on - strand, within Rv0304c at 371.890 kb on + strand, within Rv0304c at 371.890 kb on + strand, within Rv0304c at 371.891 kb on - strand, within Rv0304c at 371.969 kb on + strand, within Rv0304c at 372.346 kb on + strand at 372.347 kb on - strand at 372.406 kb on + strand at 372.495 kb on - strand at 372.554 kb on + strand at 372.555 kb on - strand at 372.557 kb on + strand at 372.596 kb on + strand at 372.609 kb on - strand at 372.665 kb on - strand at 372.765 kb on - strand at 372.765 kb on - strand at 372.881 kb on + strand at 372.882 kb on - strand at 372.988 kb on - strand at 373.076 kb on - strand at 373.077 kb on + strand at 373.078 kb on - strand at 373.078 kb on - strand at 373.108 kb on - strand at 373.108 kb on - strand at 373.314 kb on - strand, within Rv0305c at 373.314 kb on - strand, within Rv0305c at 373.314 kb on - strand, within Rv0305c at 373.317 kb on + strand, within Rv0305c at 373.373 kb on + strand, within Rv0305c at 373.373 kb on + strand, within Rv0305c at 373.373 kb on + strand, within Rv0305c at 373.373 kb on + strand, within Rv0305c at 373.373 kb on + strand, within Rv0305c at 373.373 kb on + strand, within Rv0305c at 373.393 kb on - strand, within Rv0305c at 373.675 kb on - strand, within Rv0305c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Phenazine methosulfate 0.0054 mM remove 365,178 + -0.1 365,179 - -0.6 365,179 - +0.1 365,304 + -0.9 365,565 + Rv0303 0.36 -0.8 365,693 + Rv0303 0.50 -0.1 365,695 + Rv0303 0.51 -0.2 365,696 - Rv0303 0.51 +0.1 365,696 - Rv0303 0.51 -0.1 365,696 - Rv0303 0.51 -0.8 365,762 + Rv0303 0.58 +0.2 365,762 + Rv0303 0.58 -1.4 365,798 + Rv0303 0.62 -0.9 365,799 - Rv0303 0.62 +0.5 365,865 + Rv0303 0.69 +1.4 365,918 + Rv0303 0.75 +0.9 365,918 + Rv0303 0.75 -0.6 366,077 + +0.9 366,140 + -0.2 366,140 + -0.0 366,140 + +0.7 366,141 - +1.0 366,141 - -0.2 366,141 - -0.3 366,141 - -2.2 366,159 - -0.5 366,189 - +2.2 366,452 - -0.3 366,482 - +0.1 366,735 - +1.9 366,735 - +3.9 366,887 + Rv0304c 0.11 -0.3 366,908 - Rv0304c 0.11 -0.6 366,908 - Rv0304c 0.11 -0.2 366,968 - Rv0304c 0.12 -0.3 366,968 - Rv0304c 0.12 -1.6 367,027 + Rv0304c 0.13 +1.9 367,027 + Rv0304c 0.13 +0.4 367,161 - Rv0304c 0.15 -0.2 367,346 - Rv0304c 0.18 +0.4 367,512 + Rv0304c 0.21 -0.1 367,512 + Rv0304c 0.21 +0.4 367,512 + Rv0304c 0.21 +0.5 367,513 - Rv0304c 0.21 -0.0 367,513 - Rv0304c 0.21 -0.4 367,513 - Rv0304c 0.21 -0.3 367,513 - Rv0304c 0.21 +1.4 367,513 - Rv0304c 0.21 -1.7 367,513 - Rv0304c 0.21 +0.9 367,809 + Rv0304c 0.25 +0.1 367,809 + Rv0304c 0.25 -0.9 367,809 + Rv0304c 0.25 +0.0 367,810 - Rv0304c 0.25 -0.7 367,835 - Rv0304c 0.25 -0.4 367,922 - Rv0304c 0.27 +0.9 367,981 + Rv0304c 0.28 +0.3 367,982 - Rv0304c 0.28 +0.8 367,982 - Rv0304c 0.28 +0.1 368,012 - Rv0304c 0.28 +0.6 368,066 + Rv0304c 0.29 +1.0 368,290 - Rv0304c 0.32 -0.4 368,417 + Rv0304c 0.34 +0.1 368,452 + Rv0304c 0.35 +0.0 368,452 + Rv0304c 0.35 -0.6 368,452 + Rv0304c 0.35 -0.2 368,453 - Rv0304c 0.35 -3.2 368,453 - Rv0304c 0.35 -0.7 368,453 - Rv0304c 0.35 -0.0 368,453 - Rv0304c 0.35 -0.3 368,453 - Rv0304c 0.35 +1.0 368,482 + Rv0304c 0.35 -0.3 368,482 + Rv0304c 0.35 +0.6 368,723 - Rv0304c 0.39 -0.5 368,723 - Rv0304c 0.39 -0.1 368,723 - Rv0304c 0.39 +0.4 368,723 - Rv0304c 0.39 -0.5 368,723 - Rv0304c 0.39 -0.7 369,098 + Rv0304c 0.45 -0.5 369,177 + Rv0304c 0.46 -0.4 369,177 + Rv0304c 0.46 +1.6 369,178 - Rv0304c 0.46 -0.2 369,224 + Rv0304c 0.46 -0.1 369,225 - Rv0304c 0.46 -0.6 369,241 + Rv0304c 0.47 +0.6 369,444 - Rv0304c 0.50 -0.4 369,444 - Rv0304c 0.50 +1.8 369,573 - Rv0304c 0.52 -0.9 369,745 + Rv0304c 0.54 +0.2 369,745 + Rv0304c 0.54 +1.7 369,746 - Rv0304c 0.54 -0.4 369,746 - Rv0304c 0.54 +1.9 369,753 + Rv0304c 0.54 -0.5 369,805 + Rv0304c 0.55 -0.1 369,805 + Rv0304c 0.55 +0.0 369,805 + Rv0304c 0.55 -0.6 369,973 + Rv0304c 0.58 -0.1 369,974 - Rv0304c 0.58 +0.1 370,002 - Rv0304c 0.58 +1.0 370,002 - Rv0304c 0.58 +0.3 370,002 - Rv0304c 0.58 +0.1 370,037 - Rv0304c 0.59 -0.8 370,208 + Rv0304c 0.61 -0.1 370,262 + Rv0304c 0.62 -0.1 370,263 - Rv0304c 0.62 +1.1 370,263 - Rv0304c 0.62 +0.4 370,263 - Rv0304c 0.62 -0.0 370,301 + Rv0304c 0.63 -0.9 370,314 + Rv0304c 0.63 +0.1 370,314 + Rv0304c 0.63 -1.9 370,315 - Rv0304c 0.63 -1.1 370,367 + Rv0304c 0.64 -0.6 370,368 - Rv0304c 0.64 +0.3 370,447 + Rv0304c 0.65 +0.0 371,026 - Rv0304c 0.74 -0.9 371,114 - Rv0304c 0.75 -1.0 371,281 + Rv0304c 0.78 +0.8 371,281 + Rv0304c 0.78 +0.3 371,281 + Rv0304c 0.78 -0.5 371,282 - Rv0304c 0.78 -1.2 371,516 + Rv0304c 0.81 -0.1 371,610 - Rv0304c 0.83 +0.1 371,687 + Rv0304c 0.84 +1.0 371,800 + Rv0304c 0.85 +0.3 371,811 + Rv0304c 0.86 -0.3 371,812 - Rv0304c 0.86 +0.9 371,812 - Rv0304c 0.86 -0.1 371,890 + Rv0304c 0.87 -0.5 371,890 + Rv0304c 0.87 +1.9 371,891 - Rv0304c 0.87 +0.9 371,969 + Rv0304c 0.88 +1.9 372,346 + -0.9 372,347 - +1.9 372,406 + +0.4 372,495 - +0.9 372,554 + +0.1 372,555 - -0.3 372,557 + +0.5 372,596 + -0.9 372,609 - -0.2 372,665 - +0.6 372,765 - -0.1 372,765 - +0.3 372,881 + -1.8 372,882 - -0.2 372,988 - -0.4 373,076 - -1.9 373,077 + +0.7 373,078 - -0.2 373,078 - +0.0 373,108 - -0.5 373,108 - -0.3 373,314 - Rv0305c 0.17 -0.6 373,314 - Rv0305c 0.17 +0.2 373,314 - Rv0305c 0.17 -0.1 373,317 + Rv0305c 0.17 -0.5 373,373 + Rv0305c 0.19 -0.2 373,373 + Rv0305c 0.19 -0.1 373,373 + Rv0305c 0.19 -0.8 373,373 + Rv0305c 0.19 +0.9 373,373 + Rv0305c 0.19 +0.6 373,373 + Rv0305c 0.19 +0.7 373,393 - Rv0305c 0.20 -0.1 373,675 - Rv0305c 0.30 -1.4
Or see this region's nucleotide sequence