Experiment: 7H9 with Phenazine methosulfate 0.0054 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0074 and Rv0075 are separated by 12 nucleotides Rv0075 and Rv0076c are separated by 14 nucleotides Rv0076c and Rv0077c are separated by 63 nucleotides
Rv0074: Rv0074 - Conserved protein, at 82,748 to 83,983
Rv0074
Rv0075: Rv0075 - Probable aminotransferase, at 83,996 to 85,168
Rv0075
Rv0076c: Rv0076c - Probable membrane protein, at 85,183 to 85,572
Rv0076c
Rv0077c: Rv0077c - Probable oxidoreductase, at 85,636 to 86,466
Rv0077c
Position (kb) 83
84
85
86 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 83.114 kb on + strand, within Rv0074 at 83.114 kb on + strand, within Rv0074 at 83.114 kb on + strand, within Rv0074 at 83.115 kb on - strand, within Rv0074 at 83.141 kb on + strand, within Rv0074 at 83.403 kb on + strand, within Rv0074 at 83.403 kb on + strand, within Rv0074 at 83.403 kb on + strand, within Rv0074 at 83.404 kb on - strand, within Rv0074 at 83.409 kb on + strand, within Rv0074 at 83.409 kb on + strand, within Rv0074 at 83.585 kb on + strand, within Rv0074 at 83.586 kb on - strand, within Rv0074 at 83.738 kb on + strand, within Rv0074 at 83.738 kb on + strand, within Rv0074 at 83.846 kb on + strand, within Rv0074 at 83.941 kb on - strand at 83.941 kb on - strand at 83.982 kb on - strand at 84.066 kb on - strand at 84.082 kb on - strand at 84.234 kb on - strand, within Rv0075 at 84.353 kb on + strand, within Rv0075 at 84.353 kb on + strand, within Rv0075 at 84.353 kb on + strand, within Rv0075 at 84.353 kb on + strand, within Rv0075 at 84.494 kb on - strand, within Rv0075 at 84.494 kb on - strand, within Rv0075 at 84.544 kb on - strand, within Rv0075 at 84.544 kb on - strand, within Rv0075 at 84.544 kb on - strand, within Rv0075 at 84.743 kb on - strand, within Rv0075 at 84.834 kb on - strand, within Rv0075 at 84.834 kb on - strand, within Rv0075 at 84.918 kb on + strand, within Rv0075 at 84.919 kb on - strand, within Rv0075 at 84.919 kb on - strand, within Rv0075 at 84.952 kb on + strand, within Rv0075 at 84.953 kb on - strand, within Rv0075 at 84.956 kb on + strand, within Rv0075 at 84.956 kb on + strand, within Rv0075 at 84.957 kb on - strand, within Rv0075 at 85.011 kb on - strand, within Rv0075 at 85.167 kb on - strand at 85.223 kb on + strand, within Rv0076c at 85.224 kb on - strand, within Rv0076c at 85.224 kb on - strand, within Rv0076c at 85.224 kb on - strand, within Rv0076c at 85.276 kb on + strand, within Rv0076c at 85.301 kb on - strand, within Rv0076c at 85.576 kb on - strand at 85.576 kb on - strand at 85.721 kb on - strand, within Rv0077c at 86.104 kb on - strand, within Rv0077c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Phenazine methosulfate 0.0054 mM remove 83,114 + Rv0074 0.30 -1.9 83,114 + Rv0074 0.30 -0.7 83,114 + Rv0074 0.30 -0.2 83,115 - Rv0074 0.30 -0.1 83,141 + Rv0074 0.32 -0.3 83,403 + Rv0074 0.53 -0.4 83,403 + Rv0074 0.53 -0.8 83,403 + Rv0074 0.53 -1.5 83,404 - Rv0074 0.53 -0.6 83,409 + Rv0074 0.53 +3.4 83,409 + Rv0074 0.53 -2.2 83,585 + Rv0074 0.68 -0.1 83,586 - Rv0074 0.68 -0.4 83,738 + Rv0074 0.80 -0.2 83,738 + Rv0074 0.80 -0.9 83,846 + Rv0074 0.89 -0.1 83,941 - +4.2 83,941 - -0.4 83,982 - -0.6 84,066 - +0.0 84,082 - +0.1 84,234 - Rv0075 0.20 +0.3 84,353 + Rv0075 0.30 +0.2 84,353 + Rv0075 0.30 +0.2 84,353 + Rv0075 0.30 -0.5 84,353 + Rv0075 0.30 -0.5 84,494 - Rv0075 0.42 +1.8 84,494 - Rv0075 0.42 +1.1 84,544 - Rv0075 0.47 -0.3 84,544 - Rv0075 0.47 +0.2 84,544 - Rv0075 0.47 -0.3 84,743 - Rv0075 0.64 -0.1 84,834 - Rv0075 0.71 +1.0 84,834 - Rv0075 0.71 +0.5 84,918 + Rv0075 0.79 +0.2 84,919 - Rv0075 0.79 +0.5 84,919 - Rv0075 0.79 +0.7 84,952 + Rv0075 0.82 -0.2 84,953 - Rv0075 0.82 +0.6 84,956 + Rv0075 0.82 -0.2 84,956 + Rv0075 0.82 +0.8 84,957 - Rv0075 0.82 +1.7 85,011 - Rv0075 0.87 -0.7 85,167 - -0.2 85,223 + Rv0076c 0.10 -0.1 85,224 - Rv0076c 0.11 +0.2 85,224 - Rv0076c 0.11 -0.2 85,224 - Rv0076c 0.11 +1.0 85,276 + Rv0076c 0.24 +0.1 85,301 - Rv0076c 0.30 -0.4 85,576 - +0.1 85,576 - +0.2 85,721 - Rv0077c 0.10 -0.5 86,104 - Rv0077c 0.56 -0.1
Or see this region's nucleotide sequence