Experiment: 7H9 with Tetracycline 0.0058 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0379 and Rv0380c are separated by 75 nucleotides Rv0380c and Rv0381c are separated by 95 nucleotides Rv0381c and Rv0382c are separated by 17 nucleotides Rv0382c and Rv0383c are separated by 80 nucleotides
Rv0379: Rv0379 - Possible protein transport protein SecE2, at 455,977 to 456,192
Rv0379
Rv0380c: Rv0380c - Possible RNA methyltransferase (RNA methylase), at 456,268 to 456,819
Rv0380c
Rv0381c: Rv0381c - Hypothetical protein, at 456,915 to 457,823
Rv0381c
Rv0382c: Rv0382c - Probable orotate phosphoribosyltransferase PyrE (OPRT) (oprtase), at 457,841 to 458,380
Rv0382c
Rv0383c: Rv0383c - Possible conserved secreted protein, at 458,461 to 459,315
Rv0383c
Position (kb) 456
457
458 Strain fitness (log2 ratio) -1
0
1 at 455.961 kb on + strand at 455.961 kb on + strand at 455.963 kb on + strand at 455.963 kb on + strand at 455.970 kb on + strand at 455.986 kb on + strand at 455.987 kb on - strand at 455.987 kb on - strand at 455.987 kb on - strand at 456.139 kb on + strand, within Rv0379 at 456.139 kb on + strand, within Rv0379 at 456.190 kb on + strand at 456.269 kb on + strand at 456.270 kb on - strand at 456.412 kb on - strand, within Rv0380c at 456.827 kb on + strand at 456.895 kb on - strand at 456.968 kb on - strand at 456.999 kb on - strand at 456.999 kb on - strand at 457.013 kb on + strand, within Rv0381c at 457.066 kb on + strand, within Rv0381c at 457.066 kb on + strand, within Rv0381c at 457.066 kb on + strand, within Rv0381c at 457.067 kb on - strand, within Rv0381c at 457.202 kb on - strand, within Rv0381c at 457.202 kb on - strand, within Rv0381c at 457.244 kb on + strand, within Rv0381c at 457.244 kb on + strand, within Rv0381c at 457.354 kb on + strand, within Rv0381c at 457.368 kb on - strand, within Rv0381c at 457.399 kb on + strand, within Rv0381c at 457.645 kb on + strand, within Rv0381c at 457.645 kb on + strand, within Rv0381c at 457.645 kb on + strand, within Rv0381c at 457.646 kb on - strand, within Rv0381c at 458.624 kb on - strand, within Rv0383c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Tetracycline 0.0058 mM remove 455,961 + -0.3 455,961 + -1.6 455,963 + +0.3 455,963 + -0.7 455,970 + -0.1 455,986 + -0.2 455,987 - +0.0 455,987 - +0.2 455,987 - -0.4 456,139 + Rv0379 0.75 -0.4 456,139 + Rv0379 0.75 +0.4 456,190 + -0.4 456,269 + -0.2 456,270 - -0.0 456,412 - Rv0380c 0.26 -1.1 456,827 + -0.6 456,895 - -0.5 456,968 - -0.5 456,999 - +0.2 456,999 - -0.5 457,013 + Rv0381c 0.11 -0.2 457,066 + Rv0381c 0.17 +0.4 457,066 + Rv0381c 0.17 +0.1 457,066 + Rv0381c 0.17 -1.2 457,067 - Rv0381c 0.17 +0.3 457,202 - Rv0381c 0.32 -0.3 457,202 - Rv0381c 0.32 -0.5 457,244 + Rv0381c 0.36 -0.9 457,244 + Rv0381c 0.36 -0.5 457,354 + Rv0381c 0.48 +0.4 457,368 - Rv0381c 0.50 -0.6 457,399 + Rv0381c 0.53 -0.0 457,645 + Rv0381c 0.80 +0.3 457,645 + Rv0381c 0.80 -0.6 457,645 + Rv0381c 0.80 -0.6 457,646 - Rv0381c 0.80 -0.4 458,624 - Rv0383c 0.19 -0.4
Or see this region's nucleotide sequence