Experiment: 7H9 with 8-hydroxy-nitroquinoline 0.03 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0537c and Rv0538 are separated by 308 nucleotides Rv0538 and Rv0539 are separated by 56 nucleotides Rv0539 and Rv0540 overlap by 4 nucleotides
Rv0537c: Rv0537c - Probable integral membrane protein, at 628,298 to 629,731
Rv0537c
Rv0538: Rv0538 - Possible conserved membrane protein, at 630,040 to 631,686
Rv0538
Rv0539: Rv0539 - Probable dolichyl-phosphate sugar synthase (dolichol-phosphate sugar synthetase) (dolichol-phosphate sugar transferase) (sugar phosphoryldolichol synthase), at 631,743 to 632,375
Rv0539
Rv0540: Rv0540 - Conserved hypothetical protein, at 632,372 to 633,034
Rv0540
Position (kb) 630
631
632 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 629.095 kb on + strand, within Rv0537c at 629.151 kb on + strand, within Rv0537c at 629.151 kb on + strand, within Rv0537c at 629.151 kb on + strand, within Rv0537c at 629.152 kb on - strand, within Rv0537c at 629.152 kb on - strand, within Rv0537c at 629.227 kb on - strand, within Rv0537c at 629.279 kb on - strand, within Rv0537c at 629.342 kb on - strand, within Rv0537c at 629.631 kb on + strand at 629.632 kb on - strand at 629.829 kb on + strand at 629.829 kb on + strand at 629.829 kb on + strand at 629.830 kb on - strand at 629.830 kb on - strand at 629.936 kb on + strand at 629.958 kb on + strand at 629.958 kb on + strand at 629.958 kb on + strand at 629.987 kb on - strand at 629.987 kb on - strand at 630.167 kb on + strand at 630.401 kb on + strand, within Rv0538 at 630.546 kb on + strand, within Rv0538 at 630.546 kb on + strand, within Rv0538 at 630.547 kb on - strand, within Rv0538 at 630.547 kb on - strand, within Rv0538 at 630.672 kb on + strand, within Rv0538 at 630.766 kb on + strand, within Rv0538 at 630.767 kb on - strand, within Rv0538 at 630.784 kb on + strand, within Rv0538 at 630.784 kb on + strand, within Rv0538 at 630.826 kb on + strand, within Rv0538 at 630.827 kb on - strand, within Rv0538 at 631.670 kb on + strand at 631.670 kb on + strand at 631.670 kb on + strand at 631.670 kb on + strand at 631.670 kb on + strand at 632.283 kb on + strand, within Rv0539 at 632.284 kb on - strand, within Rv0539 at 632.552 kb on - strand, within Rv0540 at 632.602 kb on + strand, within Rv0540 at 632.603 kb on - strand, within Rv0540
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with 8-hydroxy-nitroquinoline 0.03 mM remove 629,095 + Rv0537c 0.56 -0.5 629,151 + Rv0537c 0.59 +0.0 629,151 + Rv0537c 0.59 -0.3 629,151 + Rv0537c 0.59 +1.1 629,152 - Rv0537c 0.60 +0.6 629,152 - Rv0537c 0.60 +0.7 629,227 - Rv0537c 0.65 -1.3 629,279 - Rv0537c 0.68 +0.5 629,342 - Rv0537c 0.73 +0.1 629,631 + -0.2 629,632 - -0.2 629,829 + -0.4 629,829 + -1.3 629,829 + -0.2 629,830 - -2.9 629,830 - +0.8 629,936 + -0.7 629,958 + -0.8 629,958 + -0.3 629,958 + -0.3 629,987 - -0.1 629,987 - -0.6 630,167 + -0.2 630,401 + Rv0538 0.22 -0.9 630,546 + Rv0538 0.31 +1.1 630,546 + Rv0538 0.31 +0.1 630,547 - Rv0538 0.31 +0.5 630,547 - Rv0538 0.31 +1.6 630,672 + Rv0538 0.38 -0.1 630,766 + Rv0538 0.44 -1.4 630,767 - Rv0538 0.44 +1.0 630,784 + Rv0538 0.45 -0.1 630,784 + Rv0538 0.45 -0.1 630,826 + Rv0538 0.48 +1.3 630,827 - Rv0538 0.48 +0.2 631,670 + -0.1 631,670 + -0.3 631,670 + -0.1 631,670 + +2.7 631,670 + +0.1 632,283 + Rv0539 0.85 -0.5 632,284 - Rv0539 0.85 -0.9 632,552 - Rv0540 0.27 +0.5 632,602 + Rv0540 0.35 -0.3 632,603 - Rv0540 0.35 -0.4
Or see this region's nucleotide sequence