Experiment: 7H9 with 8-hydroxy-nitroquinoline 0.03 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0449c and Rv0450c are separated by 39 nucleotides Rv0450c and Rv0451c overlap by 4 nucleotides Rv0451c and Rv0452 are separated by 231 nucleotides
Rv0449c: Rv0449c - Conserved hypothetical protein, at 537,229 to 538,548
Rv0449c
Rv0450c: Rv0450c - Probable conserved transmembrane transport protein MmpL4, at 538,588 to 541,491
Rv0450c
Rv0451c: Rv0451c - Probable conserved membrane protein MmpS4, at 541,488 to 541,910
Rv0451c
Rv0452: Rv0452 - Possible transcriptional regulatory protein, at 542,142 to 542,852
Rv0452
Position (kb) 538
539
540
541
542 Strain fitness (log2 ratio) -2
-1
0
1
2 at 537.866 kb on + strand, within Rv0449c at 537.866 kb on + strand, within Rv0449c at 537.866 kb on + strand, within Rv0449c at 537.866 kb on + strand, within Rv0449c at 537.866 kb on + strand, within Rv0449c at 537.867 kb on - strand, within Rv0449c at 537.953 kb on + strand, within Rv0449c at 537.954 kb on - strand, within Rv0449c at 538.037 kb on + strand, within Rv0449c at 538.038 kb on - strand, within Rv0449c at 538.170 kb on - strand, within Rv0449c at 538.170 kb on - strand, within Rv0449c at 538.230 kb on - strand, within Rv0449c at 538.230 kb on - strand, within Rv0449c at 538.325 kb on + strand, within Rv0449c at 538.326 kb on - strand, within Rv0449c at 538.407 kb on - strand, within Rv0449c at 538.407 kb on - strand, within Rv0449c at 538.448 kb on + strand at 538.449 kb on - strand at 538.449 kb on - strand at 538.481 kb on + strand at 538.481 kb on + strand at 538.481 kb on + strand at 538.555 kb on + strand at 538.712 kb on - strand at 538.921 kb on + strand, within Rv0450c at 538.922 kb on - strand, within Rv0450c at 539.475 kb on + strand, within Rv0450c at 539.859 kb on + strand, within Rv0450c at 539.862 kb on + strand, within Rv0450c at 539.887 kb on - strand, within Rv0450c at 540.244 kb on + strand, within Rv0450c at 540.264 kb on - strand, within Rv0450c at 540.264 kb on - strand, within Rv0450c at 540.396 kb on + strand, within Rv0450c at 540.430 kb on + strand, within Rv0450c at 540.430 kb on + strand, within Rv0450c at 540.431 kb on - strand, within Rv0450c at 540.472 kb on + strand, within Rv0450c at 540.473 kb on - strand, within Rv0450c at 540.513 kb on - strand, within Rv0450c at 540.597 kb on - strand, within Rv0450c at 540.605 kb on + strand, within Rv0450c at 540.605 kb on + strand, within Rv0450c at 540.606 kb on - strand, within Rv0450c at 540.609 kb on - strand, within Rv0450c at 540.674 kb on + strand, within Rv0450c at 540.675 kb on - strand, within Rv0450c at 540.748 kb on - strand, within Rv0450c at 540.900 kb on + strand, within Rv0450c at 541.510 kb on + strand at 541.644 kb on - strand, within Rv0451c at 541.801 kb on + strand, within Rv0451c at 541.905 kb on + strand at 541.906 kb on - strand at 541.906 kb on - strand at 541.906 kb on - strand at 541.995 kb on + strand at 541.995 kb on + strand at 542.009 kb on + strand at 542.038 kb on - strand at 542.038 kb on - strand at 542.059 kb on + strand at 542.059 kb on + strand at 542.060 kb on - strand at 542.079 kb on - strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.108 kb on - strand at 542.399 kb on - strand, within Rv0452
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with 8-hydroxy-nitroquinoline 0.03 mM remove 537,866 + Rv0449c 0.48 +0.3 537,866 + Rv0449c 0.48 -0.0 537,866 + Rv0449c 0.48 -2.0 537,866 + Rv0449c 0.48 +0.0 537,866 + Rv0449c 0.48 +0.7 537,867 - Rv0449c 0.48 -1.3 537,953 + Rv0449c 0.55 -0.3 537,954 - Rv0449c 0.55 -0.6 538,037 + Rv0449c 0.61 +0.8 538,038 - Rv0449c 0.61 -1.3 538,170 - Rv0449c 0.71 -0.2 538,170 - Rv0449c 0.71 +0.6 538,230 - Rv0449c 0.76 -0.6 538,230 - Rv0449c 0.76 +0.1 538,325 + Rv0449c 0.83 +0.2 538,326 - Rv0449c 0.83 -0.9 538,407 - Rv0449c 0.89 +1.7 538,407 - Rv0449c 0.89 -0.5 538,448 + +0.3 538,449 - +0.3 538,449 - -0.2 538,481 + -1.2 538,481 + +0.4 538,481 + -0.2 538,555 + -0.0 538,712 - -2.2 538,921 + Rv0450c 0.11 +2.7 538,922 - Rv0450c 0.12 -1.3 539,475 + Rv0450c 0.31 -0.3 539,859 + Rv0450c 0.44 -1.1 539,862 + Rv0450c 0.44 -0.9 539,887 - Rv0450c 0.45 -1.4 540,244 + Rv0450c 0.57 -1.2 540,264 - Rv0450c 0.58 -0.2 540,264 - Rv0450c 0.58 -0.7 540,396 + Rv0450c 0.62 +0.1 540,430 + Rv0450c 0.63 +0.1 540,430 + Rv0450c 0.63 -0.6 540,431 - Rv0450c 0.63 -0.4 540,472 + Rv0450c 0.65 -1.5 540,473 - Rv0450c 0.65 -1.1 540,513 - Rv0450c 0.66 +2.2 540,597 - Rv0450c 0.69 -0.3 540,605 + Rv0450c 0.69 -0.9 540,605 + Rv0450c 0.69 -1.2 540,606 - Rv0450c 0.69 -1.7 540,609 - Rv0450c 0.70 -1.0 540,674 + Rv0450c 0.72 -0.9 540,675 - Rv0450c 0.72 -0.5 540,748 - Rv0450c 0.74 +0.1 540,900 + Rv0450c 0.80 -1.2 541,510 + -0.7 541,644 - Rv0451c 0.37 -2.7 541,801 + Rv0451c 0.74 +1.3 541,905 + +0.7 541,906 - +0.2 541,906 - +0.4 541,906 - -0.5 541,995 + -0.7 541,995 + +0.3 542,009 + +1.1 542,038 - -0.5 542,038 - +1.7 542,059 + -0.3 542,059 + -0.1 542,060 - +0.2 542,079 - -0.9 542,107 + -1.0 542,107 + +0.0 542,107 + -0.1 542,107 + -0.4 542,107 + -1.5 542,107 + -0.9 542,107 + -0.4 542,108 - -0.6 542,399 - Rv0452 0.36 -1.1
Or see this region's nucleotide sequence