Experiment: 7H9 with Doxycycline hyclate 0.0035 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0338c and Rv0339c are separated by 108 nucleotides Rv0339c and Rv0340 are separated by 185 nucleotides Rv0340 and Rv0341 are separated by 188 nucleotides
Rv0338c: Rv0338c - Probable iron-sulfur-binding reductase, at 403,193 to 405,841
Rv0338c
Rv0339c: Rv0339c - Possible transcriptional regulatory protein, at 405,950 to 408,448
Rv0339c
Rv0340: Rv0340 - Conserved protein, at 408,634 to 409,173
Rv0340
Rv0341: Rv0341 - Isoniazid inductible gene protein IniB, at 409,362 to 410,801
Rv0341
Position (kb) 405
406
407
408
409 Strain fitness (log2 ratio) -2
-1
0
1
2 at 405.885 kb on - strand at 405.885 kb on - strand at 405.885 kb on - strand at 405.937 kb on - strand at 406.124 kb on + strand at 406.130 kb on + strand at 406.130 kb on + strand at 406.264 kb on + strand, within Rv0339c at 406.638 kb on - strand, within Rv0339c at 406.716 kb on + strand, within Rv0339c at 406.743 kb on + strand, within Rv0339c at 406.744 kb on - strand, within Rv0339c at 407.006 kb on + strand, within Rv0339c at 407.109 kb on + strand, within Rv0339c at 407.405 kb on + strand, within Rv0339c at 407.607 kb on - strand, within Rv0339c at 407.629 kb on + strand, within Rv0339c at 408.412 kb on - strand at 408.477 kb on - strand at 408.585 kb on - strand at 408.595 kb on + strand at 409.132 kb on - strand at 409.172 kb on - strand at 409.208 kb on + strand at 409.209 kb on - strand at 409.242 kb on + strand at 409.381 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Doxycycline hyclate 0.0035 mM remove 405,885 - +1.8 405,885 - -1.9 405,885 - -1.8 405,937 - -0.0 406,124 + -0.2 406,130 + -0.4 406,130 + -0.4 406,264 + Rv0339c 0.13 +0.2 406,638 - Rv0339c 0.28 +0.7 406,716 + Rv0339c 0.31 +0.3 406,743 + Rv0339c 0.32 +0.1 406,744 - Rv0339c 0.32 +1.9 407,006 + Rv0339c 0.42 -0.0 407,109 + Rv0339c 0.46 -0.2 407,405 + Rv0339c 0.58 -0.1 407,607 - Rv0339c 0.66 -0.2 407,629 + Rv0339c 0.67 +0.8 408,412 - -0.8 408,477 - -0.5 408,585 - -0.5 408,595 + +1.8 409,132 - -0.7 409,172 - -0.2 409,208 + -0.5 409,209 - +0.2 409,242 + -0.2 409,381 - +0.3
Or see this region's nucleotide sequence