Experiment: 7H9 with Doxycycline hyclate 0.0035 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0889c and Rv0890c are separated by 86 nucleotides Rv0890c and Rv0891c are separated by 1 nucleotides
Rv0889c: Rv0889c - Probable citrate synthase II CitA, at 988,740 to 989,861
Rv0889c
Rv0890c: Rv0890c - Probable transcriptional regulatory protein (probably LuxR-family), at 989,948 to 992,596
Rv0890c
Rv0891c: Rv0891c - Possible transcriptional regulatory protein, at 992,598 to 993,455
Rv0891c
Position (kb) 989
990
991
992
993 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 989.104 kb on + strand, within Rv0889c at 989.470 kb on + strand, within Rv0889c at 989.470 kb on + strand, within Rv0889c at 989.498 kb on - strand, within Rv0889c at 989.733 kb on + strand, within Rv0889c at 989.862 kb on - strand at 989.898 kb on - strand at 989.982 kb on - strand at 989.982 kb on - strand at 989.990 kb on + strand at 990.189 kb on + strand at 990.189 kb on + strand at 990.189 kb on + strand at 990.189 kb on + strand at 990.190 kb on - strand at 990.438 kb on + strand, within Rv0890c at 990.677 kb on - strand, within Rv0890c at 990.744 kb on + strand, within Rv0890c at 990.744 kb on + strand, within Rv0890c at 990.744 kb on + strand, within Rv0890c at 990.744 kb on + strand, within Rv0890c at 990.745 kb on - strand, within Rv0890c at 990.745 kb on - strand, within Rv0890c at 990.774 kb on + strand, within Rv0890c at 990.774 kb on + strand, within Rv0890c at 990.819 kb on - strand, within Rv0890c at 990.846 kb on + strand, within Rv0890c at 990.868 kb on + strand, within Rv0890c at 990.868 kb on + strand, within Rv0890c at 990.868 kb on + strand, within Rv0890c at 990.868 kb on + strand, within Rv0890c at 990.868 kb on + strand, within Rv0890c at 990.868 kb on + strand, within Rv0890c at 990.868 kb on + strand, within Rv0890c at 990.869 kb on - strand, within Rv0890c at 990.869 kb on - strand, within Rv0890c at 990.869 kb on - strand, within Rv0890c at 990.869 kb on - strand, within Rv0890c at 990.869 kb on - strand, within Rv0890c at 990.869 kb on - strand, within Rv0890c at 990.869 kb on - strand, within Rv0890c at 990.869 kb on - strand, within Rv0890c at 990.870 kb on + strand, within Rv0890c at 990.870 kb on + strand, within Rv0890c at 990.870 kb on + strand, within Rv0890c at 990.870 kb on + strand, within Rv0890c at 990.870 kb on + strand, within Rv0890c at 990.871 kb on - strand, within Rv0890c at 990.872 kb on + strand, within Rv0890c at 990.872 kb on + strand, within Rv0890c at 990.872 kb on + strand, within Rv0890c at 990.872 kb on + strand, within Rv0890c at 990.873 kb on - strand, within Rv0890c at 990.873 kb on - strand, within Rv0890c at 990.873 kb on - strand, within Rv0890c at 990.983 kb on - strand, within Rv0890c at 991.085 kb on + strand, within Rv0890c at 991.144 kb on + strand, within Rv0890c at 991.177 kb on - strand, within Rv0890c at 991.200 kb on + strand, within Rv0890c at 991.373 kb on + strand, within Rv0890c at 991.635 kb on + strand, within Rv0890c at 991.636 kb on - strand, within Rv0890c at 991.636 kb on - strand, within Rv0890c at 991.636 kb on - strand, within Rv0890c at 991.638 kb on + strand, within Rv0890c at 991.639 kb on - strand, within Rv0890c at 992.082 kb on - strand, within Rv0890c at 992.205 kb on - strand, within Rv0890c at 992.255 kb on + strand, within Rv0890c at 992.285 kb on + strand, within Rv0890c at 992.285 kb on + strand, within Rv0890c at 992.605 kb on - strand at 992.605 kb on - strand at 992.605 kb on - strand at 992.916 kb on + strand, within Rv0891c at 992.917 kb on - strand, within Rv0891c at 992.937 kb on + strand, within Rv0891c at 992.938 kb on - strand, within Rv0891c at 992.938 kb on - strand, within Rv0891c at 992.939 kb on + strand, within Rv0891c at 992.940 kb on - strand, within Rv0891c at 992.940 kb on - strand, within Rv0891c at 992.943 kb on + strand, within Rv0891c at 992.943 kb on + strand, within Rv0891c at 992.943 kb on + strand, within Rv0891c at 993.029 kb on + strand, within Rv0891c at 993.029 kb on + strand, within Rv0891c at 993.030 kb on - strand, within Rv0891c at 993.216 kb on + strand, within Rv0891c at 993.341 kb on + strand, within Rv0891c at 993.342 kb on - strand, within Rv0891c at 993.434 kb on + strand at 993.477 kb on - strand at 993.526 kb on + strand at 993.527 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Doxycycline hyclate 0.0035 mM remove 989,104 + Rv0889c 0.32 +0.2 989,470 + Rv0889c 0.65 +0.0 989,470 + Rv0889c 0.65 +0.6 989,498 - Rv0889c 0.68 -0.6 989,733 + Rv0889c 0.89 +0.2 989,862 - +0.3 989,898 - -0.5 989,982 - -2.0 989,982 - -0.1 989,990 + -2.2 990,189 + +1.1 990,189 + +0.2 990,189 + +0.5 990,189 + +0.2 990,190 - +1.4 990,438 + Rv0890c 0.18 -0.8 990,677 - Rv0890c 0.28 -0.6 990,744 + Rv0890c 0.30 +0.2 990,744 + Rv0890c 0.30 -0.1 990,744 + Rv0890c 0.30 -0.5 990,744 + Rv0890c 0.30 +0.7 990,745 - Rv0890c 0.30 +0.4 990,745 - Rv0890c 0.30 -0.4 990,774 + Rv0890c 0.31 -0.0 990,774 + Rv0890c 0.31 +0.3 990,819 - Rv0890c 0.33 -0.2 990,846 + Rv0890c 0.34 +0.3 990,868 + Rv0890c 0.35 -1.0 990,868 + Rv0890c 0.35 -0.3 990,868 + Rv0890c 0.35 +0.3 990,868 + Rv0890c 0.35 +1.0 990,868 + Rv0890c 0.35 +0.6 990,868 + Rv0890c 0.35 -0.1 990,868 + Rv0890c 0.35 +0.3 990,869 - Rv0890c 0.35 -2.7 990,869 - Rv0890c 0.35 +0.3 990,869 - Rv0890c 0.35 -0.1 990,869 - Rv0890c 0.35 -0.6 990,869 - Rv0890c 0.35 -0.5 990,869 - Rv0890c 0.35 -0.5 990,869 - Rv0890c 0.35 +0.6 990,869 - Rv0890c 0.35 +0.1 990,870 + Rv0890c 0.35 +1.1 990,870 + Rv0890c 0.35 +0.4 990,870 + Rv0890c 0.35 -1.0 990,870 + Rv0890c 0.35 +0.1 990,870 + Rv0890c 0.35 -0.0 990,871 - Rv0890c 0.35 -0.1 990,872 + Rv0890c 0.35 -0.4 990,872 + Rv0890c 0.35 +0.6 990,872 + Rv0890c 0.35 -0.0 990,872 + Rv0890c 0.35 +1.4 990,873 - Rv0890c 0.35 -0.0 990,873 - Rv0890c 0.35 +0.1 990,873 - Rv0890c 0.35 +1.3 990,983 - Rv0890c 0.39 +0.7 991,085 + Rv0890c 0.43 -1.6 991,144 + Rv0890c 0.45 -0.5 991,177 - Rv0890c 0.46 +3.4 991,200 + Rv0890c 0.47 -2.2 991,373 + Rv0890c 0.54 -0.3 991,635 + Rv0890c 0.64 -2.5 991,636 - Rv0890c 0.64 -0.7 991,636 - Rv0890c 0.64 -0.4 991,636 - Rv0890c 0.64 +0.4 991,638 + Rv0890c 0.64 +0.8 991,639 - Rv0890c 0.64 -0.3 992,082 - Rv0890c 0.81 +0.0 992,205 - Rv0890c 0.85 +0.4 992,255 + Rv0890c 0.87 +1.4 992,285 + Rv0890c 0.88 -0.2 992,285 + Rv0890c 0.88 -0.3 992,605 - -0.5 992,605 - +0.1 992,605 - +1.4 992,916 + Rv0891c 0.37 +0.4 992,917 - Rv0891c 0.37 -0.2 992,937 + Rv0891c 0.40 -0.4 992,938 - Rv0891c 0.40 -2.1 992,938 - Rv0891c 0.40 +0.8 992,939 + Rv0891c 0.40 +0.0 992,940 - Rv0891c 0.40 +1.6 992,940 - Rv0891c 0.40 -0.6 992,943 + Rv0891c 0.40 -0.0 992,943 + Rv0891c 0.40 -0.3 992,943 + Rv0891c 0.40 -0.1 993,029 + Rv0891c 0.50 +3.8 993,029 + Rv0891c 0.50 -1.5 993,030 - Rv0891c 0.50 -0.7 993,216 + Rv0891c 0.72 -0.3 993,341 + Rv0891c 0.87 +1.8 993,342 - Rv0891c 0.87 +0.3 993,434 + +0.7 993,477 - -1.2 993,526 + -0.2 993,527 - -0.2
Or see this region's nucleotide sequence