Experiment: 7H9 with Doxycycline hyclate 0.0035 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0837c and Rv0838 are separated by 688 nucleotides Rv0838 and Rv0839 are separated by 86 nucleotides Rv0839 and Rv0840c are separated by 67 nucleotides
Rv0837c: Rv0837c - Hypothetical protein, at 933,003 to 934,031
Rv0837c
Rv0838: Rv0838 - Probable conserved lipoprotein LpqR, at 934,720 to 935,490
Rv0838
Rv0839: Rv0839 - Conserved hypothetical protein, at 935,577 to 936,389
Rv0839
Rv0840c: Rv0840c - Probable proline iminopeptidase Pip (prolyl aminopeptidase) (pap), at 936,457 to 937,317
Rv0840c
Position (kb) 934
935
936 Strain fitness (log2 ratio) -2
-1
0
1
2 at 933.743 kb on - strand, within Rv0837c at 933.874 kb on + strand, within Rv0837c at 933.874 kb on + strand, within Rv0837c at 933.874 kb on + strand, within Rv0837c at 933.875 kb on - strand, within Rv0837c at 933.875 kb on - strand, within Rv0837c at 933.918 kb on + strand, within Rv0837c at 933.919 kb on - strand, within Rv0837c at 933.951 kb on + strand at 934.086 kb on + strand at 934.119 kb on - strand at 934.458 kb on - strand at 934.458 kb on - strand at 934.465 kb on + strand at 934.465 kb on + strand at 934.466 kb on - strand at 934.854 kb on - strand, within Rv0838 at 935.107 kb on + strand, within Rv0838 at 935.182 kb on + strand, within Rv0838 at 935.182 kb on + strand, within Rv0838 at 935.183 kb on - strand, within Rv0838 at 935.183 kb on - strand, within Rv0838 at 935.190 kb on + strand, within Rv0838 at 935.519 kb on + strand at 935.602 kb on - strand at 935.603 kb on + strand at 935.614 kb on - strand at 935.683 kb on - strand, within Rv0839 at 935.683 kb on - strand, within Rv0839 at 935.873 kb on + strand, within Rv0839 at 935.873 kb on + strand, within Rv0839 at 935.873 kb on + strand, within Rv0839 at 935.874 kb on - strand, within Rv0839 at 935.957 kb on - strand, within Rv0839 at 935.979 kb on - strand, within Rv0839 at 936.016 kb on - strand, within Rv0839 at 936.016 kb on - strand, within Rv0839 at 936.220 kb on + strand, within Rv0839 at 936.221 kb on - strand, within Rv0839 at 936.221 kb on - strand, within Rv0839
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Doxycycline hyclate 0.0035 mM remove 933,743 - Rv0837c 0.72 +0.7 933,874 + Rv0837c 0.85 +0.2 933,874 + Rv0837c 0.85 +0.1 933,874 + Rv0837c 0.85 -0.4 933,875 - Rv0837c 0.85 +0.1 933,875 - Rv0837c 0.85 +0.7 933,918 + Rv0837c 0.89 +0.5 933,919 - Rv0837c 0.89 -1.1 933,951 + -0.2 934,086 + -1.1 934,119 - +0.6 934,458 - -0.4 934,458 - -0.4 934,465 + -0.3 934,465 + -0.9 934,466 - +0.0 934,854 - Rv0838 0.17 -0.7 935,107 + Rv0838 0.50 +0.4 935,182 + Rv0838 0.60 +0.8 935,182 + Rv0838 0.60 -2.0 935,183 - Rv0838 0.60 -1.1 935,183 - Rv0838 0.60 -1.9 935,190 + Rv0838 0.61 +0.2 935,519 + -0.3 935,602 - +0.3 935,603 + -0.1 935,614 - +1.1 935,683 - Rv0839 0.13 -0.6 935,683 - Rv0839 0.13 +0.2 935,873 + Rv0839 0.36 +0.1 935,873 + Rv0839 0.36 +0.2 935,873 + Rv0839 0.36 +0.5 935,874 - Rv0839 0.37 -0.6 935,957 - Rv0839 0.47 -0.0 935,979 - Rv0839 0.49 +2.1 936,016 - Rv0839 0.54 -0.9 936,016 - Rv0839 0.54 -0.0 936,220 + Rv0839 0.79 -0.2 936,221 - Rv0839 0.79 -0.4 936,221 - Rv0839 0.79 -0.1
Or see this region's nucleotide sequence