Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3350c

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
3,755,036	+				-0.4
3,755,122	-				-1.3
3,755,273	-				+1.5
3,755,287	-				-0.5
3,755,424	+				-0.3
3,755,425	-				+1.4
3,755,465	-				-2.2
3,755,524	+				+0.2
3,755,529	+				+0.0
3,755,554	+				-0.3
3,755,758	-				-0.3
3,755,758	-				-0.2
3,755,758	-				-0.3
3,755,817	-				+1.5
3,755,906	-				+0.8
3,755,906	-				-0.2
3,755,906	-				-0.0
3,755,942	+				-3.3
3,755,943	-				-0.6
3,755,943	-				+0.1
3,756,055	+				+0.1
3,756,055	+				-0.1
3,756,056	-				+0.8
3,756,056	-				+0.2
3,756,056	-				+0.6
3,756,191	+				-0.3
3,756,192	-				-0.2
3,756,309	-				-0.2
3,756,550	+				-0.2
3,756,550	+				-0.5
3,756,551	-				-0.1
3,756,676	+				+0.3
3,756,863	+				-0.7
3,756,952	+				+1.4
3,756,952	+				+0.4
3,757,132	+		Rv3350c	0.11	+0.4
3,757,132	+		Rv3350c	0.11	+0.2
3,757,530	-		Rv3350c	0.14	-0.7
3,757,786	+		Rv3350c	0.16	+1.8
3,757,786	+		Rv3350c	0.16	-0.1
3,757,787	-		Rv3350c	0.16	-0.3
3,757,787	-		Rv3350c	0.16	-1.0
3,758,041	+		Rv3350c	0.19	+0.1
3,758,041	+		Rv3350c	0.19	+0.5
3,758,042	-		Rv3350c	0.19	-0.7
3,758,042	-		Rv3350c	0.19	-0.2
3,758,042	-		Rv3350c	0.19	-1.1
3,758,042	-		Rv3350c	0.19	-0.1
3,758,042	-		Rv3350c	0.19	-0.2
3,758,042	-		Rv3350c	0.19	-0.5
3,758,243	+		Rv3350c	0.21	-1.5
3,758,243	+		Rv3350c	0.21	+0.3
3,758,353	+		Rv3350c	0.22	-0.3
3,758,354	-		Rv3350c	0.22	-0.4
3,758,356	+		Rv3350c	0.22	-0.3
3,758,361	+		Rv3350c	0.22	+0.6
3,758,362	-		Rv3350c	0.22	-1.9
3,758,362	-		Rv3350c	0.22	+0.1
3,758,362	-		Rv3350c	0.22	-0.5
3,758,363	+		Rv3350c	0.22	+0.1
3,758,364	-		Rv3350c	0.22	-0.4
3,758,364	-		Rv3350c	0.22	-0.1
3,758,375	+		Rv3350c	0.22	+0.9
3,758,406	+		Rv3350c	0.22	-0.2
3,758,406	+		Rv3350c	0.22	-0.2
3,758,406	+		Rv3350c	0.22	-1.0
3,758,407	-		Rv3350c	0.22	+0.1
3,758,407	-		Rv3350c	0.22	+0.7
3,758,407	-		Rv3350c	0.22	+0.1
3,758,407	-		Rv3350c	0.22	+1.8
3,758,407	-		Rv3350c	0.22	-0.9
3,758,407	-		Rv3350c	0.22	+3.1
3,758,440	-		Rv3350c	0.22	+0.4
3,758,689	+		Rv3350c	0.25	-0.1
3,758,690	-		Rv3350c	0.25	+0.8
3,758,893	+		Rv3350c	0.26	-0.2
3,758,894	-		Rv3350c	0.26	+1.5
3,758,894	-		Rv3350c	0.26	-1.0
3,758,894	-		Rv3350c	0.26	-1.4
3,758,963	+		Rv3350c	0.27	+1.8
3,759,069	-		Rv3350c	0.28	-0.1
3,759,193	+		Rv3350c	0.29	-0.4
3,759,193	+		Rv3350c	0.29	-0.1
3,759,193	+		Rv3350c	0.29	-1.3
3,759,193	+		Rv3350c	0.29	-3.5
3,759,193	+		Rv3350c	0.29	+0.3
3,759,193	+		Rv3350c	0.29	-0.2
3,759,193	+		Rv3350c	0.29	+0.1
3,759,193	+		Rv3350c	0.29	+0.2
3,759,193	+		Rv3350c	0.29	-0.1
3,759,194	-		Rv3350c	0.29	-0.8
3,759,194	-		Rv3350c	0.29	+0.6
3,759,194	-		Rv3350c	0.29	-0.4
3,759,194	-		Rv3350c	0.29	-0.8
3,759,194	-		Rv3350c	0.29	+1.3
3,759,194	-		Rv3350c	0.29	+2.0
3,759,194	-		Rv3350c	0.29	+0.4
3,759,194	-		Rv3350c	0.29	-0.2
3,759,194	-		Rv3350c	0.29	-0.8
3,759,194	-		Rv3350c	0.29	+0.1
3,759,273	+		Rv3350c	0.30	+0.2
3,759,276	-		Rv3350c	0.30	+1.3
3,759,368	+		Rv3350c	0.31	-0.1
3,759,547	+		Rv3350c	0.32	+0.4
3,759,547	+		Rv3350c	0.32	+0.2
3,759,547	+		Rv3350c	0.32	-1.5
3,759,548	-		Rv3350c	0.32	+0.3
3,760,025	+		Rv3350c	0.37	+0.7
3,760,025	+		Rv3350c	0.37	-0.5
3,760,025	+		Rv3350c	0.37	-0.5
3,760,025	+		Rv3350c	0.37	-0.4
3,760,026	-		Rv3350c	0.37	+1.1
3,760,026	-		Rv3350c	0.37	+0.4
3,760,026	-		Rv3350c	0.37	-0.2
3,760,026	-		Rv3350c	0.37	-0.3
3,760,029	+		Rv3350c	0.37	+0.2
3,760,029	+		Rv3350c	0.37	+0.4
3,760,030	-		Rv3350c	0.37	-0.4
3,760,030	-		Rv3350c	0.37	-0.4
3,760,030	-		Rv3350c	0.37	-0.2
3,760,300	-		Rv3350c	0.39	-1.4
3,760,300	-		Rv3350c	0.39	+0.1
3,760,495	+		Rv3350c	0.41	-0.6
3,760,495	+		Rv3350c	0.41	-0.6
3,760,496	-		Rv3350c	0.41	-0.3
3,760,675	+		Rv3350c	0.42	+0.0
3,760,675	+		Rv3350c	0.42	-2.3
3,760,676	-		Rv3350c	0.42	-0.2
3,760,766	-		Rv3350c	0.43	+1.0
3,760,891	+		Rv3350c	0.44	+0.2
3,760,892	-		Rv3350c	0.44	+0.2
3,761,360	+		Rv3350c	0.48	-0.7
3,761,360	+		Rv3350c	0.48	-0.2
3,761,360	+		Rv3350c	0.48	-0.0
3,761,361	-		Rv3350c	0.49	-0.5
3,761,361	-		Rv3350c	0.49	-0.2
3,761,361	-		Rv3350c	0.49	+0.4
3,761,820	-		Rv3350c	0.53	+0.3
3,761,829	+		Rv3350c	0.53	-0.2
3,761,829	+		Rv3350c	0.53	+0.0
3,761,830	-		Rv3350c	0.53	-0.5
3,761,830	-		Rv3350c	0.53	-0.1
3,761,830	-		Rv3350c	0.53	-1.0
3,761,954	+		Rv3350c	0.54	+0.2
3,761,955	-		Rv3350c	0.54	+0.8
3,762,042	-		Rv3350c	0.55	-0.6
3,762,042	-		Rv3350c	0.55	-0.2
3,762,160	+		Rv3350c	0.56	-1.0
3,762,161	-		Rv3350c	0.56	-0.5
3,762,284	-		Rv3350c	0.57	-0.2
3,762,378	-		Rv3350c	0.58	-0.4
3,762,383	+		Rv3350c	0.58	-0.4
3,762,384	-		Rv3350c	0.58	-0.6
3,762,384	-		Rv3350c	0.58	+2.3
3,762,444	-		Rv3350c	0.58	+0.4
3,762,472	+		Rv3350c	0.58	+0.8
3,762,545	+		Rv3350c	0.59	-0.5
3,762,567	-		Rv3350c	0.59	-0.3
3,762,688	+		Rv3350c	0.60	-0.8
3,763,126	+		Rv3350c	0.64	+0.1
3,763,126	+		Rv3350c	0.64	-2.2
3,763,127	-		Rv3350c	0.64	-1.1
3,763,210	-		Rv3350c	0.65	-0.3
3,763,210	-		Rv3350c	0.65	+0.4
3,763,616	-		Rv3350c	0.69	+2.1
3,763,653	+		Rv3350c	0.69	-0.2
3,763,654	-		Rv3350c	0.69	-1.8
3,763,654	-		Rv3350c	0.69	-0.2
3,763,739	+		Rv3350c	0.70	+0.9
3,763,739	+		Rv3350c	0.70	+0.8
3,763,739	+		Rv3350c	0.70	+0.1
3,763,739	+		Rv3350c	0.70	+0.2
3,763,739	+		Rv3350c	0.70	-0.1
3,763,740	-		Rv3350c	0.70	-0.3
3,764,233	+		Rv3350c	0.74	-0.6
3,764,234	-		Rv3350c	0.74	-0.4
3,764,234	-		Rv3350c	0.74	-1.0
3,764,307	-		Rv3350c	0.75	+0.5
3,764,307	-		Rv3350c	0.75	+0.5
3,764,307	-		Rv3350c	0.75	+2.1
3,764,533	+		Rv3350c	0.77	-0.2
3,764,533	+		Rv3350c	0.77	+0.0
3,764,534	-		Rv3350c	0.77	-0.6
3,764,534	-		Rv3350c	0.77	+0.2
3,764,888	-		Rv3350c	0.80	+0.3
3,764,888	-		Rv3350c	0.80	-0.0
3,765,258	-		Rv3350c	0.83	-0.2
3,765,595	-		Rv3350c	0.86	-0.8
3,765,799	+		Rv3350c	0.88	+0.7
3,765,800	-		Rv3350c	0.88	+0.2
3,765,980	-		Rv3350c	0.90	-0.6
3,766,069	+				+0.4
3,766,070	-				+0.1
3,766,486	+				-0.2
3,766,486	+				+0.4
3,766,487	-				+0.9
3,766,684	+				-0.5
3,767,056	+				-0.5
3,767,267	+				+0.4
3,767,267	+				-1.2
3,767,267	+				-0.0
3,767,267	+				-1.9
3,767,267	+				+0.1
3,767,268	-				+0.4
3,767,268	-				+0.2
3,767,268	-				+0.1
3,767,444	+		Rv3351c	0.12	-0.2
3,767,444	+		Rv3351c	0.12	-0.4
3,767,444	+		Rv3351c	0.12	-0.4
3,767,445	-		Rv3351c	0.12	-0.3
3,767,587	+		Rv3351c	0.30	+0.0
3,767,588	-		Rv3351c	0.30	-0.2
3,767,588	-		Rv3351c	0.30	-1.2
3,767,588	-		Rv3351c	0.30	+0.1
3,767,588	-		Rv3351c	0.30	+2.9
3,767,608	+		Rv3351c	0.33	-0.1
3,767,609	-		Rv3351c	0.33	-1.3
3,767,654	-		Rv3351c	0.39	-1.7
3,767,683	+		Rv3351c	0.42	-0.6
3,767,684	-		Rv3351c	0.43	+1.2
3,767,684	-		Rv3351c	0.43	-0.3
3,767,692	+		Rv3351c	0.44	-0.5
3,767,693	-		Rv3351c	0.44	-0.2
3,767,786	-		Rv3351c	0.55	-0.8
3,767,786	-		Rv3351c	0.55	+0.5
3,767,995	+		Rv3351c	0.82	-0.9
3,767,995	+		Rv3351c	0.82	+0.6
3,768,002	+		Rv3351c	0.83	+0.7
3,768,003	-		Rv3351c	0.83	+0.1
3,768,020	-		Rv3351c	0.85	+1.8
3,768,035	+		Rv3351c	0.87	-1.3
3,768,036	-		Rv3351c	0.87	-0.5