Experiment: cholesterol 100uM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0228 and Rv0229c are separated by 27 nucleotides Rv0229c and Rv0230c overlap by 4 nucleotides Rv0230c and Rv0231 are separated by 94 nucleotides
Rv0228: Rv0228 - Probable integral membrane acyltransferase, at 273,055 to 274,278
Rv0228
Rv0229c: Rv0229c - Possible conserved membrane protein with PIN domain, at 274,306 to 274,986
Rv0229c
Rv0230c: Rv0230c - Probable phosphotriesterase Php (parathion hydrolase) (PTE) (aryldialkylphosphatase) (paraoxonase) (a-esterase) (aryltriphosphatase) (paraoxon hydrolase), at 274,983 to 275,963
Rv0230c
Rv0231: Rv0231 - Probable acyl-CoA dehydrogenase FadE4, at 276,058 to 277,764
Rv0231
Position (kb) 274
275
276 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 274.307 kb on + strand at 274.390 kb on + strand, within Rv0229c at 274.391 kb on - strand, within Rv0229c at 274.461 kb on + strand, within Rv0229c at 274.474 kb on + strand, within Rv0229c at 274.607 kb on - strand, within Rv0229c at 274.607 kb on - strand, within Rv0229c at 274.706 kb on + strand, within Rv0229c at 274.707 kb on - strand, within Rv0229c at 274.707 kb on - strand, within Rv0229c at 274.854 kb on - strand, within Rv0229c at 274.854 kb on - strand, within Rv0229c at 274.919 kb on - strand at 274.939 kb on + strand at 275.108 kb on - strand, within Rv0230c at 275.162 kb on - strand, within Rv0230c at 275.182 kb on - strand, within Rv0230c at 275.287 kb on + strand, within Rv0230c at 275.287 kb on + strand, within Rv0230c at 275.288 kb on - strand, within Rv0230c at 275.317 kb on + strand, within Rv0230c at 275.318 kb on - strand, within Rv0230c at 275.638 kb on + strand, within Rv0230c at 275.638 kb on + strand, within Rv0230c at 275.639 kb on - strand, within Rv0230c at 275.647 kb on + strand, within Rv0230c at 275.665 kb on + strand, within Rv0230c at 275.666 kb on - strand, within Rv0230c at 275.666 kb on - strand, within Rv0230c at 275.671 kb on + strand, within Rv0230c at 275.671 kb on + strand, within Rv0230c at 275.671 kb on + strand, within Rv0230c at 275.737 kb on + strand, within Rv0230c at 275.738 kb on - strand, within Rv0230c at 275.738 kb on - strand, within Rv0230c at 275.948 kb on + strand at 275.948 kb on + strand at 275.952 kb on + strand at 275.952 kb on + strand at 275.952 kb on + strand at 275.952 kb on + strand at 275.953 kb on - strand at 275.975 kb on + strand at 275.975 kb on + strand at 275.976 kb on - strand at 275.976 kb on - strand at 276.012 kb on + strand at 276.092 kb on - strand at 276.259 kb on + strand, within Rv0231 at 276.290 kb on - strand, within Rv0231 at 276.326 kb on - strand, within Rv0231 at 276.326 kb on - strand, within Rv0231 at 276.337 kb on + strand, within Rv0231 at 276.337 kb on + strand, within Rv0231 at 276.337 kb on + strand, within Rv0231 at 276.337 kb on + strand, within Rv0231 at 276.338 kb on - strand, within Rv0231 at 276.338 kb on - strand, within Rv0231 at 276.338 kb on - strand, within Rv0231 at 276.343 kb on + strand, within Rv0231 at 276.547 kb on + strand, within Rv0231 at 276.547 kb on + strand, within Rv0231 at 276.548 kb on - strand, within Rv0231 at 276.548 kb on - strand, within Rv0231 at 276.548 kb on - strand, within Rv0231 at 276.550 kb on + strand, within Rv0231 at 276.550 kb on + strand, within Rv0231 at 276.551 kb on - strand, within Rv0231 at 276.551 kb on - strand, within Rv0231 at 276.551 kb on - strand, within Rv0231 at 276.551 kb on - strand, within Rv0231 at 276.625 kb on + strand, within Rv0231 at 276.625 kb on + strand, within Rv0231 at 276.626 kb on - strand, within Rv0231 at 276.626 kb on - strand, within Rv0231 at 276.662 kb on - strand, within Rv0231 at 276.662 kb on - strand, within Rv0231 at 276.697 kb on + strand, within Rv0231 at 276.697 kb on + strand, within Rv0231 at 276.698 kb on - strand, within Rv0231 at 276.698 kb on - strand, within Rv0231 at 276.709 kb on + strand, within Rv0231 at 276.710 kb on - strand, within Rv0231 at 276.805 kb on + strand, within Rv0231 at 276.805 kb on + strand, within Rv0231 at 276.805 kb on + strand, within Rv0231 at 276.805 kb on + strand, within Rv0231 at 276.805 kb on + strand, within Rv0231 at 276.806 kb on - strand, within Rv0231 at 276.806 kb on - strand, within Rv0231 at 276.806 kb on - strand, within Rv0231 at 276.850 kb on + strand, within Rv0231 at 276.851 kb on - strand, within Rv0231 at 276.887 kb on - strand, within Rv0231 at 276.940 kb on + strand, within Rv0231 at 276.941 kb on - strand, within Rv0231 at 276.941 kb on - strand, within Rv0231 at 276.941 kb on - strand, within Rv0231
Per-strain Table
Position Strand Gene LocusTag Fraction cholesterol 100uM (C) remove 274,307 + -1.1 274,390 + Rv0229c 0.12 -0.4 274,391 - Rv0229c 0.12 -0.1 274,461 + Rv0229c 0.23 +1.6 274,474 + Rv0229c 0.25 -0.0 274,607 - Rv0229c 0.44 -2.1 274,607 - Rv0229c 0.44 -1.4 274,706 + Rv0229c 0.59 -1.0 274,707 - Rv0229c 0.59 -1.9 274,707 - Rv0229c 0.59 +0.7 274,854 - Rv0229c 0.80 -0.0 274,854 - Rv0229c 0.80 -0.6 274,919 - +0.2 274,939 + -2.4 275,108 - Rv0230c 0.13 -0.7 275,162 - Rv0230c 0.18 +2.7 275,182 - Rv0230c 0.20 -0.0 275,287 + Rv0230c 0.31 +1.5 275,287 + Rv0230c 0.31 +0.0 275,288 - Rv0230c 0.31 -0.7 275,317 + Rv0230c 0.34 -0.1 275,318 - Rv0230c 0.34 -0.3 275,638 + Rv0230c 0.67 +0.2 275,638 + Rv0230c 0.67 -0.2 275,639 - Rv0230c 0.67 +1.0 275,647 + Rv0230c 0.68 +1.1 275,665 + Rv0230c 0.70 -0.9 275,666 - Rv0230c 0.70 -0.4 275,666 - Rv0230c 0.70 -1.1 275,671 + Rv0230c 0.70 -0.3 275,671 + Rv0230c 0.70 -0.5 275,671 + Rv0230c 0.70 +2.1 275,737 + Rv0230c 0.77 -0.4 275,738 - Rv0230c 0.77 -0.4 275,738 - Rv0230c 0.77 +0.5 275,948 + -1.1 275,948 + +0.3 275,952 + -0.4 275,952 + +0.2 275,952 + -0.0 275,952 + -0.1 275,953 - -0.3 275,975 + -0.1 275,975 + -0.5 275,976 - +0.3 275,976 - -2.3 276,012 + -0.5 276,092 - -0.4 276,259 + Rv0231 0.12 -1.5 276,290 - Rv0231 0.14 -0.8 276,326 - Rv0231 0.16 -0.0 276,326 - Rv0231 0.16 -0.5 276,337 + Rv0231 0.16 -0.4 276,337 + Rv0231 0.16 -0.1 276,337 + Rv0231 0.16 -0.5 276,337 + Rv0231 0.16 +0.9 276,338 - Rv0231 0.16 -0.6 276,338 - Rv0231 0.16 -1.2 276,338 - Rv0231 0.16 -0.9 276,343 + Rv0231 0.17 -0.6 276,547 + Rv0231 0.29 -2.2 276,547 + Rv0231 0.29 -1.1 276,548 - Rv0231 0.29 -0.0 276,548 - Rv0231 0.29 -0.9 276,548 - Rv0231 0.29 -0.4 276,550 + Rv0231 0.29 -0.6 276,550 + Rv0231 0.29 +0.1 276,551 - Rv0231 0.29 -1.0 276,551 - Rv0231 0.29 -0.1 276,551 - Rv0231 0.29 -1.1 276,551 - Rv0231 0.29 +0.9 276,625 + Rv0231 0.33 -0.6 276,625 + Rv0231 0.33 -0.1 276,626 - Rv0231 0.33 -0.7 276,626 - Rv0231 0.33 +0.5 276,662 - Rv0231 0.35 -0.1 276,662 - Rv0231 0.35 -0.2 276,697 + Rv0231 0.37 -0.6 276,697 + Rv0231 0.37 -0.9 276,698 - Rv0231 0.37 -0.0 276,698 - Rv0231 0.37 -0.9 276,709 + Rv0231 0.38 -3.6 276,710 - Rv0231 0.38 +0.6 276,805 + Rv0231 0.44 -1.1 276,805 + Rv0231 0.44 -0.7 276,805 + Rv0231 0.44 -0.1 276,805 + Rv0231 0.44 -0.3 276,805 + Rv0231 0.44 +0.5 276,806 - Rv0231 0.44 +1.4 276,806 - Rv0231 0.44 +0.3 276,806 - Rv0231 0.44 -0.7 276,850 + Rv0231 0.46 -0.8 276,851 - Rv0231 0.46 -0.3 276,887 - Rv0231 0.49 +0.2 276,940 + Rv0231 0.52 +0.8 276,941 - Rv0231 0.52 +2.5 276,941 - Rv0231 0.52 -0.2 276,941 - Rv0231 0.52 -0.6
Or see this region's nucleotide sequence