Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17270 and HMPREF1058_RS17265 are separated by 3 nucleotides HMPREF1058_RS17265 and HMPREF1058_RS17260 are separated by 162 nucleotides HMPREF1058_RS17260 and HMPREF1058_RS17255 are separated by 14 nucleotides
HMPREF1058_RS17270: HMPREF1058_RS17270 - mannose-1-phosphate guanylyltransferase, at 480,043 to 481,086
_RS17270
HMPREF1058_RS17265: HMPREF1058_RS17265 - hypothetical protein, at 481,090 to 481,518
_RS17265
HMPREF1058_RS17260: HMPREF1058_RS17260 - family 78 glycoside hydrolase catalytic domain, at 481,681 to 483,825
_RS17260
HMPREF1058_RS17255: HMPREF1058_RS17255 - right-handed parallel beta-helix repeat-containing protein, at 483,840 to 485,663
_RS17255
Position (kb) 481
482
483
484 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 480.750 kb on - strand, within HMPREF1058_RS17270 at 480.750 kb on - strand, within HMPREF1058_RS17270 at 480.777 kb on + strand, within HMPREF1058_RS17270 at 480.778 kb on - strand, within HMPREF1058_RS17270 at 480.785 kb on + strand, within HMPREF1058_RS17270 at 480.785 kb on + strand, within HMPREF1058_RS17270 at 480.786 kb on - strand, within HMPREF1058_RS17270 at 480.786 kb on - strand, within HMPREF1058_RS17270 at 480.790 kb on + strand, within HMPREF1058_RS17270 at 480.957 kb on - strand, within HMPREF1058_RS17270 at 480.986 kb on + strand at 481.003 kb on + strand at 481.004 kb on - strand at 481.005 kb on + strand at 481.063 kb on - strand at 481.097 kb on + strand at 481.131 kb on + strand at 481.131 kb on + strand at 481.131 kb on + strand at 481.131 kb on + strand at 481.158 kb on - strand, within HMPREF1058_RS17265 at 481.187 kb on + strand, within HMPREF1058_RS17265 at 481.187 kb on + strand, within HMPREF1058_RS17265 at 481.239 kb on - strand, within HMPREF1058_RS17265 at 481.304 kb on - strand, within HMPREF1058_RS17265 at 481.375 kb on - strand, within HMPREF1058_RS17265 at 481.533 kb on - strand at 481.544 kb on - strand at 481.575 kb on - strand at 481.586 kb on - strand at 481.586 kb on - strand at 481.586 kb on - strand at 481.589 kb on + strand at 481.590 kb on - strand at 481.590 kb on - strand at 481.655 kb on + strand at 481.674 kb on + strand at 481.803 kb on + strand at 481.806 kb on - strand at 481.806 kb on - strand at 481.806 kb on - strand at 481.810 kb on - strand at 481.810 kb on - strand at 481.884 kb on - strand at 481.922 kb on + strand, within HMPREF1058_RS17260 at 481.994 kb on + strand, within HMPREF1058_RS17260 at 481.995 kb on - strand, within HMPREF1058_RS17260 at 482.071 kb on - strand, within HMPREF1058_RS17260 at 482.154 kb on + strand, within HMPREF1058_RS17260 at 482.157 kb on - strand, within HMPREF1058_RS17260 at 482.157 kb on - strand, within HMPREF1058_RS17260 at 482.256 kb on + strand, within HMPREF1058_RS17260 at 482.256 kb on + strand, within HMPREF1058_RS17260 at 482.360 kb on - strand, within HMPREF1058_RS17260 at 482.569 kb on + strand, within HMPREF1058_RS17260 at 482.569 kb on + strand, within HMPREF1058_RS17260 at 482.574 kb on - strand, within HMPREF1058_RS17260 at 482.634 kb on - strand, within HMPREF1058_RS17260 at 482.675 kb on + strand, within HMPREF1058_RS17260 at 482.856 kb on + strand, within HMPREF1058_RS17260 at 482.870 kb on + strand, within HMPREF1058_RS17260 at 482.871 kb on - strand, within HMPREF1058_RS17260 at 482.871 kb on - strand, within HMPREF1058_RS17260 at 482.946 kb on - strand, within HMPREF1058_RS17260 at 482.951 kb on + strand, within HMPREF1058_RS17260 at 483.035 kb on - strand, within HMPREF1058_RS17260 at 483.046 kb on + strand, within HMPREF1058_RS17260 at 483.161 kb on + strand, within HMPREF1058_RS17260 at 483.162 kb on - strand, within HMPREF1058_RS17260 at 483.205 kb on - strand, within HMPREF1058_RS17260 at 483.238 kb on + strand, within HMPREF1058_RS17260 at 483.239 kb on - strand, within HMPREF1058_RS17260 at 483.349 kb on - strand, within HMPREF1058_RS17260 at 483.350 kb on + strand, within HMPREF1058_RS17260 at 483.440 kb on - strand, within HMPREF1058_RS17260 at 483.440 kb on - strand, within HMPREF1058_RS17260 at 483.462 kb on + strand, within HMPREF1058_RS17260 at 483.576 kb on - strand, within HMPREF1058_RS17260 at 483.862 kb on + strand at 484.065 kb on + strand, within HMPREF1058_RS17255 at 484.066 kb on - strand, within HMPREF1058_RS17255 at 484.066 kb on - strand, within HMPREF1058_RS17255 at 484.114 kb on - strand, within HMPREF1058_RS17255 at 484.119 kb on - strand, within HMPREF1058_RS17255 at 484.120 kb on + strand, within HMPREF1058_RS17255 at 484.138 kb on + strand, within HMPREF1058_RS17255 at 484.138 kb on + strand, within HMPREF1058_RS17255 at 484.138 kb on + strand, within HMPREF1058_RS17255 at 484.139 kb on - strand, within HMPREF1058_RS17255 at 484.153 kb on + strand, within HMPREF1058_RS17255 at 484.193 kb on + strand, within HMPREF1058_RS17255 at 484.200 kb on + strand, within HMPREF1058_RS17255 at 484.206 kb on - strand, within HMPREF1058_RS17255 at 484.206 kb on - strand, within HMPREF1058_RS17255 at 484.206 kb on - strand, within HMPREF1058_RS17255 at 484.206 kb on - strand, within HMPREF1058_RS17255 at 484.245 kb on + strand, within HMPREF1058_RS17255 at 484.482 kb on + strand, within HMPREF1058_RS17255 at 484.484 kb on + strand, within HMPREF1058_RS17255 at 484.484 kb on + strand, within HMPREF1058_RS17255 at 484.485 kb on - strand, within HMPREF1058_RS17255 at 484.510 kb on + strand, within HMPREF1058_RS17255 at 484.511 kb on - strand, within HMPREF1058_RS17255 at 484.563 kb on - strand, within HMPREF1058_RS17255 at 484.644 kb on - strand, within HMPREF1058_RS17255 at 484.681 kb on + strand, within HMPREF1058_RS17255 at 484.681 kb on + strand, within HMPREF1058_RS17255 at 484.681 kb on + strand, within HMPREF1058_RS17255 at 484.681 kb on + strand, within HMPREF1058_RS17255 at 484.682 kb on - strand, within HMPREF1058_RS17255 at 484.682 kb on - strand, within HMPREF1058_RS17255 at 484.682 kb on - strand, within HMPREF1058_RS17255 at 484.685 kb on + strand, within HMPREF1058_RS17255 at 484.686 kb on - strand, within HMPREF1058_RS17255 at 484.686 kb on - strand, within HMPREF1058_RS17255 at 484.737 kb on - strand, within HMPREF1058_RS17255 at 484.739 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 remove 480,750 - HMPREF1058_RS17270 0.68 +0.3 480,750 - HMPREF1058_RS17270 0.68 +0.6 480,777 + HMPREF1058_RS17270 0.70 +0.1 480,778 - HMPREF1058_RS17270 0.70 -2.8 480,785 + HMPREF1058_RS17270 0.71 -3.0 480,785 + HMPREF1058_RS17270 0.71 +1.2 480,786 - HMPREF1058_RS17270 0.71 +0.7 480,786 - HMPREF1058_RS17270 0.71 -0.0 480,790 + HMPREF1058_RS17270 0.72 +2.4 480,957 - HMPREF1058_RS17270 0.88 -0.0 480,986 + -1.0 481,003 + -2.0 481,004 - -0.8 481,005 + +0.2 481,063 - -1.1 481,097 + +2.3 481,131 + +0.2 481,131 + +0.4 481,131 + -2.8 481,131 + +1.0 481,158 - HMPREF1058_RS17265 0.16 -1.2 481,187 + HMPREF1058_RS17265 0.23 -2.8 481,187 + HMPREF1058_RS17265 0.23 -2.6 481,239 - HMPREF1058_RS17265 0.35 -0.8 481,304 - HMPREF1058_RS17265 0.50 +0.6 481,375 - HMPREF1058_RS17265 0.66 +0.6 481,533 - -1.3 481,544 - -0.4 481,575 - -0.2 481,586 - +1.1 481,586 - +1.7 481,586 - -1.0 481,589 + -0.6 481,590 - -1.4 481,590 - +1.6 481,655 + +0.3 481,674 + -1.2 481,803 + +2.6 481,806 - +0.1 481,806 - -1.0 481,806 - +0.9 481,810 - +0.2 481,810 - -0.5 481,884 - +1.1 481,922 + HMPREF1058_RS17260 0.11 -1.6 481,994 + HMPREF1058_RS17260 0.15 -3.8 481,995 - HMPREF1058_RS17260 0.15 +2.7 482,071 - HMPREF1058_RS17260 0.18 +3.4 482,154 + HMPREF1058_RS17260 0.22 -2.8 482,157 - HMPREF1058_RS17260 0.22 +1.4 482,157 - HMPREF1058_RS17260 0.22 +1.8 482,256 + HMPREF1058_RS17260 0.27 -0.6 482,256 + HMPREF1058_RS17260 0.27 -0.4 482,360 - HMPREF1058_RS17260 0.32 -0.1 482,569 + HMPREF1058_RS17260 0.41 +0.7 482,569 + HMPREF1058_RS17260 0.41 +0.3 482,574 - HMPREF1058_RS17260 0.42 -0.7 482,634 - HMPREF1058_RS17260 0.44 -0.4 482,675 + HMPREF1058_RS17260 0.46 +0.3 482,856 + HMPREF1058_RS17260 0.55 +0.4 482,870 + HMPREF1058_RS17260 0.55 +0.5 482,871 - HMPREF1058_RS17260 0.55 -0.0 482,871 - HMPREF1058_RS17260 0.55 +0.3 482,946 - HMPREF1058_RS17260 0.59 +0.4 482,951 + HMPREF1058_RS17260 0.59 +0.1 483,035 - HMPREF1058_RS17260 0.63 -1.1 483,046 + HMPREF1058_RS17260 0.64 -1.0 483,161 + HMPREF1058_RS17260 0.69 -0.9 483,162 - HMPREF1058_RS17260 0.69 -1.0 483,205 - HMPREF1058_RS17260 0.71 +0.7 483,238 + HMPREF1058_RS17260 0.73 -1.5 483,239 - HMPREF1058_RS17260 0.73 +0.3 483,349 - HMPREF1058_RS17260 0.78 -1.0 483,350 + HMPREF1058_RS17260 0.78 +2.0 483,440 - HMPREF1058_RS17260 0.82 -2.0 483,440 - HMPREF1058_RS17260 0.82 +2.0 483,462 + HMPREF1058_RS17260 0.83 +1.2 483,576 - HMPREF1058_RS17260 0.88 -1.0 483,862 + -0.4 484,065 + HMPREF1058_RS17255 0.12 -0.6 484,066 - HMPREF1058_RS17255 0.12 -1.6 484,066 - HMPREF1058_RS17255 0.12 +1.0 484,114 - HMPREF1058_RS17255 0.15 +1.0 484,119 - HMPREF1058_RS17255 0.15 -2.4 484,120 + HMPREF1058_RS17255 0.15 -0.7 484,138 + HMPREF1058_RS17255 0.16 +0.5 484,138 + HMPREF1058_RS17255 0.16 +0.9 484,138 + HMPREF1058_RS17255 0.16 -0.7 484,139 - HMPREF1058_RS17255 0.16 +0.6 484,153 + HMPREF1058_RS17255 0.17 +2.0 484,193 + HMPREF1058_RS17255 0.19 +1.6 484,200 + HMPREF1058_RS17255 0.20 +2.4 484,206 - HMPREF1058_RS17255 0.20 +1.8 484,206 - HMPREF1058_RS17255 0.20 +2.0 484,206 - HMPREF1058_RS17255 0.20 -0.3 484,206 - HMPREF1058_RS17255 0.20 -0.6 484,245 + HMPREF1058_RS17255 0.22 -1.0 484,482 + HMPREF1058_RS17255 0.35 +0.3 484,484 + HMPREF1058_RS17255 0.35 +0.5 484,484 + HMPREF1058_RS17255 0.35 +0.1 484,485 - HMPREF1058_RS17255 0.35 -2.6 484,510 + HMPREF1058_RS17255 0.37 -0.4 484,511 - HMPREF1058_RS17255 0.37 -2.8 484,563 - HMPREF1058_RS17255 0.40 -0.0 484,644 - HMPREF1058_RS17255 0.44 +2.8 484,681 + HMPREF1058_RS17255 0.46 -0.0 484,681 + HMPREF1058_RS17255 0.46 +0.6 484,681 + HMPREF1058_RS17255 0.46 +1.2 484,681 + HMPREF1058_RS17255 0.46 -1.6 484,682 - HMPREF1058_RS17255 0.46 -0.0 484,682 - HMPREF1058_RS17255 0.46 -3.2 484,682 - HMPREF1058_RS17255 0.46 +1.0 484,685 + HMPREF1058_RS17255 0.46 +0.7 484,686 - HMPREF1058_RS17255 0.46 -0.0 484,686 - HMPREF1058_RS17255 0.46 -0.4 484,737 - HMPREF1058_RS17255 0.49 +0.9 484,739 - -1.6
Or see this region's nucleotide sequence