Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15810 and HMPREF1058_RS15805 are separated by 247 nucleotides HMPREF1058_RS15805 and HMPREF1058_RS15800 are separated by 22 nucleotides
HMPREF1058_RS15810: HMPREF1058_RS15810 - ATP-binding protein, at 828,994 to 830,556
_RS15810
HMPREF1058_RS15805: HMPREF1058_RS15805 - PAS domain-containing protein, at 830,804 to 832,099
_RS15805
HMPREF1058_RS15800: HMPREF1058_RS15800 - sigma-54-dependent Fis family transcriptional regulator, at 832,122 to 833,477
_RS15800
Position (kb) 830
831
832
833 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 830.676 kb on + strand at 830.680 kb on + strand at 830.681 kb on - strand at 830.736 kb on + strand at 830.736 kb on + strand at 831.004 kb on + strand, within HMPREF1058_RS15805 at 831.005 kb on - strand, within HMPREF1058_RS15805 at 831.020 kb on - strand, within HMPREF1058_RS15805 at 831.032 kb on - strand, within HMPREF1058_RS15805 at 831.140 kb on - strand, within HMPREF1058_RS15805 at 831.181 kb on + strand, within HMPREF1058_RS15805 at 831.182 kb on - strand, within HMPREF1058_RS15805 at 831.227 kb on + strand, within HMPREF1058_RS15805 at 831.288 kb on + strand, within HMPREF1058_RS15805 at 831.289 kb on - strand, within HMPREF1058_RS15805 at 831.299 kb on + strand, within HMPREF1058_RS15805 at 831.344 kb on - strand, within HMPREF1058_RS15805 at 831.368 kb on - strand, within HMPREF1058_RS15805 at 831.398 kb on - strand, within HMPREF1058_RS15805 at 831.422 kb on - strand, within HMPREF1058_RS15805 at 831.577 kb on + strand, within HMPREF1058_RS15805 at 831.703 kb on + strand, within HMPREF1058_RS15805 at 831.704 kb on - strand, within HMPREF1058_RS15805 at 831.704 kb on - strand, within HMPREF1058_RS15805 at 831.722 kb on + strand, within HMPREF1058_RS15805 at 831.722 kb on + strand, within HMPREF1058_RS15805 at 831.923 kb on - strand, within HMPREF1058_RS15805 at 831.979 kb on + strand at 831.995 kb on + strand at 831.996 kb on - strand at 831.996 kb on - strand at 832.029 kb on - strand at 832.137 kb on + strand at 832.138 kb on - strand at 832.139 kb on + strand at 832.191 kb on + strand at 832.209 kb on - strand at 832.217 kb on + strand at 832.315 kb on + strand, within HMPREF1058_RS15800 at 832.371 kb on - strand, within HMPREF1058_RS15800 at 832.429 kb on + strand, within HMPREF1058_RS15800 at 832.565 kb on + strand, within HMPREF1058_RS15800 at 832.617 kb on + strand, within HMPREF1058_RS15800 at 832.832 kb on + strand, within HMPREF1058_RS15800 at 832.871 kb on + strand, within HMPREF1058_RS15800 at 832.872 kb on - strand, within HMPREF1058_RS15800 at 832.872 kb on - strand, within HMPREF1058_RS15800 at 832.949 kb on + strand, within HMPREF1058_RS15800
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 remove 830,676 + -0.5 830,680 + -0.5 830,681 - -1.1 830,736 + +0.0 830,736 + -0.1 831,004 + HMPREF1058_RS15805 0.15 -3.7 831,005 - HMPREF1058_RS15805 0.16 -1.7 831,020 - HMPREF1058_RS15805 0.17 -2.1 831,032 - HMPREF1058_RS15805 0.18 -1.7 831,140 - HMPREF1058_RS15805 0.26 -2.4 831,181 + HMPREF1058_RS15805 0.29 -2.7 831,182 - HMPREF1058_RS15805 0.29 +0.9 831,227 + HMPREF1058_RS15805 0.33 -0.3 831,288 + HMPREF1058_RS15805 0.37 -5.2 831,289 - HMPREF1058_RS15805 0.37 -2.9 831,299 + HMPREF1058_RS15805 0.38 -0.1 831,344 - HMPREF1058_RS15805 0.42 -2.2 831,368 - HMPREF1058_RS15805 0.44 -2.9 831,398 - HMPREF1058_RS15805 0.46 -1.3 831,422 - HMPREF1058_RS15805 0.48 +0.3 831,577 + HMPREF1058_RS15805 0.60 -1.3 831,703 + HMPREF1058_RS15805 0.69 -1.1 831,704 - HMPREF1058_RS15805 0.69 -1.7 831,704 - HMPREF1058_RS15805 0.69 -1.7 831,722 + HMPREF1058_RS15805 0.71 +0.2 831,722 + HMPREF1058_RS15805 0.71 -2.3 831,923 - HMPREF1058_RS15805 0.86 -4.1 831,979 + -2.6 831,995 + -2.9 831,996 - -2.8 831,996 - -0.1 832,029 - -1.7 832,137 + -2.4 832,138 - +1.0 832,139 + -1.7 832,191 + -2.3 832,209 - -2.5 832,217 + -0.1 832,315 + HMPREF1058_RS15800 0.14 -0.7 832,371 - HMPREF1058_RS15800 0.18 -1.7 832,429 + HMPREF1058_RS15800 0.23 -1.1 832,565 + HMPREF1058_RS15800 0.33 -1.7 832,617 + HMPREF1058_RS15800 0.37 -0.1 832,832 + HMPREF1058_RS15800 0.52 -0.4 832,871 + HMPREF1058_RS15800 0.55 -1.5 832,872 - HMPREF1058_RS15800 0.55 -2.4 832,872 - HMPREF1058_RS15800 0.55 -2.1 832,949 + HMPREF1058_RS15800 0.61 -2.7
Or see this region's nucleotide sequence