Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11760 and HMPREF1058_RS11755 are separated by 203 nucleotides HMPREF1058_RS11755 and HMPREF1058_RS11750 are separated by 39 nucleotides HMPREF1058_RS11750 and HMPREF1058_RS11745 are separated by 4 nucleotides
HMPREF1058_RS11760: HMPREF1058_RS11760 - TonB-dependent receptor, at 295,603 to 298,857
_RS11760
HMPREF1058_RS11755: HMPREF1058_RS11755 - mannonate dehydratase, at 299,061 to 300,236
_RS11755
HMPREF1058_RS11750: HMPREF1058_RS11750 - SDR family oxidoreductase, at 300,276 to 301,088
_RS11750
HMPREF1058_RS11745: HMPREF1058_RS11745 - WbqC family protein, at 301,093 to 301,749
_RS11745
Position (kb) 299
300
301 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 298.081 kb on - strand, within HMPREF1058_RS11760 at 298.116 kb on + strand, within HMPREF1058_RS11760 at 298.117 kb on - strand, within HMPREF1058_RS11760 at 298.158 kb on + strand, within HMPREF1058_RS11760 at 298.159 kb on - strand, within HMPREF1058_RS11760 at 298.199 kb on + strand, within HMPREF1058_RS11760 at 298.289 kb on - strand, within HMPREF1058_RS11760 at 298.294 kb on + strand, within HMPREF1058_RS11760 at 298.295 kb on - strand, within HMPREF1058_RS11760 at 298.298 kb on + strand, within HMPREF1058_RS11760 at 298.298 kb on + strand, within HMPREF1058_RS11760 at 298.298 kb on + strand, within HMPREF1058_RS11760 at 298.299 kb on - strand, within HMPREF1058_RS11760 at 298.570 kb on - strand at 298.600 kb on - strand at 298.612 kb on - strand at 298.613 kb on + strand at 298.613 kb on + strand at 298.613 kb on + strand at 298.614 kb on - strand at 298.614 kb on - strand at 298.624 kb on + strand at 298.723 kb on + strand at 298.810 kb on - strand at 298.973 kb on + strand at 298.976 kb on + strand at 299.085 kb on + strand at 299.127 kb on - strand at 299.127 kb on - strand at 299.176 kb on - strand at 299.204 kb on + strand, within HMPREF1058_RS11755 at 299.211 kb on - strand, within HMPREF1058_RS11755 at 299.250 kb on - strand, within HMPREF1058_RS11755 at 299.250 kb on - strand, within HMPREF1058_RS11755 at 299.253 kb on + strand, within HMPREF1058_RS11755 at 299.260 kb on + strand, within HMPREF1058_RS11755 at 299.260 kb on + strand, within HMPREF1058_RS11755 at 299.260 kb on + strand, within HMPREF1058_RS11755 at 299.261 kb on - strand, within HMPREF1058_RS11755 at 299.297 kb on - strand, within HMPREF1058_RS11755 at 299.445 kb on + strand, within HMPREF1058_RS11755 at 299.445 kb on + strand, within HMPREF1058_RS11755 at 299.508 kb on - strand, within HMPREF1058_RS11755 at 299.514 kb on - strand, within HMPREF1058_RS11755 at 299.545 kb on - strand, within HMPREF1058_RS11755 at 299.664 kb on - strand, within HMPREF1058_RS11755 at 299.664 kb on - strand, within HMPREF1058_RS11755 at 299.699 kb on + strand, within HMPREF1058_RS11755 at 299.699 kb on + strand, within HMPREF1058_RS11755 at 299.700 kb on - strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.877 kb on - strand, within HMPREF1058_RS11755 at 299.877 kb on - strand, within HMPREF1058_RS11755 at 299.907 kb on + strand, within HMPREF1058_RS11755 at 299.922 kb on - strand at 299.923 kb on + strand, within HMPREF1058_RS11755 at 299.935 kb on + strand, within HMPREF1058_RS11755 at 299.936 kb on - strand, within HMPREF1058_RS11755 at 299.975 kb on - strand, within HMPREF1058_RS11755 at 300.111 kb on + strand, within HMPREF1058_RS11755 at 300.111 kb on + strand, within HMPREF1058_RS11755 at 300.112 kb on - strand, within HMPREF1058_RS11755 at 300.135 kb on + strand at 300.135 kb on + strand at 300.135 kb on + strand at 300.135 kb on + strand at 300.136 kb on - strand at 300.136 kb on - strand at 300.136 kb on - strand at 300.259 kb on + strand at 300.306 kb on + strand at 300.306 kb on + strand at 300.306 kb on + strand at 300.356 kb on - strand at 300.356 kb on - strand at 300.437 kb on + strand, within HMPREF1058_RS11750 at 300.438 kb on - strand, within HMPREF1058_RS11750 at 300.439 kb on + strand, within HMPREF1058_RS11750 at 300.439 kb on + strand, within HMPREF1058_RS11750 at 300.439 kb on + strand, within HMPREF1058_RS11750 at 300.440 kb on - strand, within HMPREF1058_RS11750 at 300.443 kb on + strand, within HMPREF1058_RS11750 at 300.443 kb on + strand, within HMPREF1058_RS11750 at 300.443 kb on + strand, within HMPREF1058_RS11750 at 300.444 kb on - strand, within HMPREF1058_RS11750 at 300.444 kb on - strand, within HMPREF1058_RS11750 at 300.603 kb on + strand, within HMPREF1058_RS11750 at 300.633 kb on - strand, within HMPREF1058_RS11750 at 300.785 kb on + strand, within HMPREF1058_RS11750 at 300.798 kb on - strand, within HMPREF1058_RS11750 at 300.828 kb on + strand, within HMPREF1058_RS11750 at 300.838 kb on + strand, within HMPREF1058_RS11750 at 300.838 kb on + strand, within HMPREF1058_RS11750 at 300.874 kb on - strand, within HMPREF1058_RS11750 at 300.875 kb on + strand, within HMPREF1058_RS11750 at 300.875 kb on + strand, within HMPREF1058_RS11750 at 300.875 kb on + strand, within HMPREF1058_RS11750 at 300.976 kb on - strand, within HMPREF1058_RS11750 at 301.083 kb on - strand at 301.091 kb on + strand at 301.092 kb on - strand at 301.109 kb on - strand at 301.158 kb on + strand at 301.158 kb on + strand at 301.224 kb on - strand, within HMPREF1058_RS11745
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 remove 298,081 - HMPREF1058_RS11760 0.76 +1.8 298,116 + HMPREF1058_RS11760 0.77 +0.3 298,117 - HMPREF1058_RS11760 0.77 -0.3 298,158 + HMPREF1058_RS11760 0.78 -4.0 298,159 - HMPREF1058_RS11760 0.79 +0.9 298,199 + HMPREF1058_RS11760 0.80 +0.9 298,289 - HMPREF1058_RS11760 0.83 +0.7 298,294 + HMPREF1058_RS11760 0.83 +1.4 298,295 - HMPREF1058_RS11760 0.83 +0.7 298,298 + HMPREF1058_RS11760 0.83 +1.5 298,298 + HMPREF1058_RS11760 0.83 +2.3 298,298 + HMPREF1058_RS11760 0.83 +0.8 298,299 - HMPREF1058_RS11760 0.83 +2.3 298,570 - +2.4 298,600 - -1.1 298,612 - +0.5 298,613 + +0.7 298,613 + +1.6 298,613 + -0.1 298,614 - +0.1 298,614 - +1.1 298,624 + -0.8 298,723 + +1.4 298,810 - -2.3 298,973 + -0.3 298,976 + +0.7 299,085 + +0.1 299,127 - +1.1 299,127 - -0.1 299,176 - -1.8 299,204 + HMPREF1058_RS11755 0.12 +1.3 299,211 - HMPREF1058_RS11755 0.13 +0.2 299,250 - HMPREF1058_RS11755 0.16 +1.2 299,250 - HMPREF1058_RS11755 0.16 -0.3 299,253 + HMPREF1058_RS11755 0.16 +0.3 299,260 + HMPREF1058_RS11755 0.17 +1.9 299,260 + HMPREF1058_RS11755 0.17 -0.1 299,260 + HMPREF1058_RS11755 0.17 -0.1 299,261 - HMPREF1058_RS11755 0.17 -2.6 299,297 - HMPREF1058_RS11755 0.20 +0.3 299,445 + HMPREF1058_RS11755 0.33 +1.7 299,445 + HMPREF1058_RS11755 0.33 +2.3 299,508 - HMPREF1058_RS11755 0.38 -0.8 299,514 - HMPREF1058_RS11755 0.39 +0.4 299,545 - HMPREF1058_RS11755 0.41 +1.0 299,664 - HMPREF1058_RS11755 0.51 +1.4 299,664 - HMPREF1058_RS11755 0.51 +0.1 299,699 + HMPREF1058_RS11755 0.54 -0.9 299,699 + HMPREF1058_RS11755 0.54 +0.5 299,700 - HMPREF1058_RS11755 0.54 +0.7 299,876 + HMPREF1058_RS11755 0.69 -0.5 299,876 + HMPREF1058_RS11755 0.69 +0.1 299,876 + HMPREF1058_RS11755 0.69 +0.4 299,876 + HMPREF1058_RS11755 0.69 +1.3 299,876 + HMPREF1058_RS11755 0.69 -0.6 299,876 + HMPREF1058_RS11755 0.69 +0.8 299,877 - HMPREF1058_RS11755 0.69 +0.5 299,877 - HMPREF1058_RS11755 0.69 -0.5 299,907 + HMPREF1058_RS11755 0.72 +0.4 299,922 - -1.3 299,923 + HMPREF1058_RS11755 0.73 -1.3 299,935 + HMPREF1058_RS11755 0.74 -0.0 299,936 - HMPREF1058_RS11755 0.74 +2.3 299,975 - HMPREF1058_RS11755 0.78 -2.0 300,111 + HMPREF1058_RS11755 0.89 +0.9 300,111 + HMPREF1058_RS11755 0.89 -0.3 300,112 - HMPREF1058_RS11755 0.89 +0.3 300,135 + +0.7 300,135 + -2.3 300,135 + +0.2 300,135 + +1.4 300,136 - -0.6 300,136 - -0.5 300,136 - -4.1 300,259 + +0.7 300,306 + -0.3 300,306 + +0.4 300,306 + -1.3 300,356 - +0.9 300,356 - +0.0 300,437 + HMPREF1058_RS11750 0.20 +0.3 300,438 - HMPREF1058_RS11750 0.20 -2.3 300,439 + HMPREF1058_RS11750 0.20 +0.5 300,439 + HMPREF1058_RS11750 0.20 -0.4 300,439 + HMPREF1058_RS11750 0.20 -1.2 300,440 - HMPREF1058_RS11750 0.20 +2.0 300,443 + HMPREF1058_RS11750 0.21 +1.8 300,443 + HMPREF1058_RS11750 0.21 +3.7 300,443 + HMPREF1058_RS11750 0.21 +0.1 300,444 - HMPREF1058_RS11750 0.21 +0.4 300,444 - HMPREF1058_RS11750 0.21 +0.3 300,603 + HMPREF1058_RS11750 0.40 +0.4 300,633 - HMPREF1058_RS11750 0.44 +0.2 300,785 + HMPREF1058_RS11750 0.63 +1.5 300,798 - HMPREF1058_RS11750 0.64 +0.4 300,828 + HMPREF1058_RS11750 0.68 +0.4 300,838 + HMPREF1058_RS11750 0.69 +0.3 300,838 + HMPREF1058_RS11750 0.69 -0.1 300,874 - HMPREF1058_RS11750 0.74 +0.9 300,875 + HMPREF1058_RS11750 0.74 +2.0 300,875 + HMPREF1058_RS11750 0.74 +0.2 300,875 + HMPREF1058_RS11750 0.74 +0.2 300,976 - HMPREF1058_RS11750 0.86 -0.5 301,083 - -2.8 301,091 + -2.2 301,092 - +0.1 301,109 - +1.6 301,158 + -3.1 301,158 + -3.4 301,224 - HMPREF1058_RS11745 0.20 -3.7
Or see this region's nucleotide sequence