Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11755 and HMPREF1058_RS11750 are separated by 39 nucleotides HMPREF1058_RS11750 and HMPREF1058_RS11745 are separated by 4 nucleotides HMPREF1058_RS11745 and HMPREF1058_RS11740 overlap by 1 nucleotides
HMPREF1058_RS11755: HMPREF1058_RS11755 - mannonate dehydratase, at 299,061 to 300,236
_RS11755
HMPREF1058_RS11750: HMPREF1058_RS11750 - SDR family oxidoreductase, at 300,276 to 301,088
_RS11750
HMPREF1058_RS11745: HMPREF1058_RS11745 - WbqC family protein, at 301,093 to 301,749
_RS11745
HMPREF1058_RS11740: HMPREF1058_RS11740 - signal peptidase I, at 301,749 to 302,612
_RS11740
Position (kb) 300
301
302 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 299.297 kb on - strand, within HMPREF1058_RS11755 at 299.445 kb on + strand, within HMPREF1058_RS11755 at 299.445 kb on + strand, within HMPREF1058_RS11755 at 299.508 kb on - strand, within HMPREF1058_RS11755 at 299.514 kb on - strand, within HMPREF1058_RS11755 at 299.545 kb on - strand, within HMPREF1058_RS11755 at 299.664 kb on - strand, within HMPREF1058_RS11755 at 299.664 kb on - strand, within HMPREF1058_RS11755 at 299.699 kb on + strand, within HMPREF1058_RS11755 at 299.699 kb on + strand, within HMPREF1058_RS11755 at 299.700 kb on - strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.876 kb on + strand, within HMPREF1058_RS11755 at 299.877 kb on - strand, within HMPREF1058_RS11755 at 299.877 kb on - strand, within HMPREF1058_RS11755 at 299.907 kb on + strand, within HMPREF1058_RS11755 at 299.922 kb on - strand at 299.923 kb on + strand, within HMPREF1058_RS11755 at 299.935 kb on + strand, within HMPREF1058_RS11755 at 299.936 kb on - strand, within HMPREF1058_RS11755 at 299.975 kb on - strand, within HMPREF1058_RS11755 at 300.111 kb on + strand, within HMPREF1058_RS11755 at 300.111 kb on + strand, within HMPREF1058_RS11755 at 300.112 kb on - strand, within HMPREF1058_RS11755 at 300.135 kb on + strand at 300.135 kb on + strand at 300.135 kb on + strand at 300.135 kb on + strand at 300.136 kb on - strand at 300.136 kb on - strand at 300.136 kb on - strand at 300.259 kb on + strand at 300.306 kb on + strand at 300.306 kb on + strand at 300.306 kb on + strand at 300.356 kb on - strand at 300.356 kb on - strand at 300.437 kb on + strand, within HMPREF1058_RS11750 at 300.438 kb on - strand, within HMPREF1058_RS11750 at 300.439 kb on + strand, within HMPREF1058_RS11750 at 300.439 kb on + strand, within HMPREF1058_RS11750 at 300.439 kb on + strand, within HMPREF1058_RS11750 at 300.440 kb on - strand, within HMPREF1058_RS11750 at 300.443 kb on + strand, within HMPREF1058_RS11750 at 300.443 kb on + strand, within HMPREF1058_RS11750 at 300.443 kb on + strand, within HMPREF1058_RS11750 at 300.444 kb on - strand, within HMPREF1058_RS11750 at 300.444 kb on - strand, within HMPREF1058_RS11750 at 300.603 kb on + strand, within HMPREF1058_RS11750 at 300.633 kb on - strand, within HMPREF1058_RS11750 at 300.785 kb on + strand, within HMPREF1058_RS11750 at 300.798 kb on - strand, within HMPREF1058_RS11750 at 300.828 kb on + strand, within HMPREF1058_RS11750 at 300.838 kb on + strand, within HMPREF1058_RS11750 at 300.838 kb on + strand, within HMPREF1058_RS11750 at 300.874 kb on - strand, within HMPREF1058_RS11750 at 300.875 kb on + strand, within HMPREF1058_RS11750 at 300.875 kb on + strand, within HMPREF1058_RS11750 at 300.875 kb on + strand, within HMPREF1058_RS11750 at 300.976 kb on - strand, within HMPREF1058_RS11750 at 301.083 kb on - strand at 301.091 kb on + strand at 301.092 kb on - strand at 301.109 kb on - strand at 301.158 kb on + strand at 301.158 kb on + strand at 301.224 kb on - strand, within HMPREF1058_RS11745 at 301.278 kb on + strand, within HMPREF1058_RS11745 at 301.322 kb on + strand, within HMPREF1058_RS11745 at 301.322 kb on + strand, within HMPREF1058_RS11745 at 301.323 kb on - strand, within HMPREF1058_RS11745 at 301.373 kb on - strand, within HMPREF1058_RS11745 at 301.392 kb on + strand, within HMPREF1058_RS11745 at 301.412 kb on + strand, within HMPREF1058_RS11745 at 301.448 kb on + strand, within HMPREF1058_RS11745 at 301.448 kb on + strand, within HMPREF1058_RS11745 at 301.473 kb on + strand, within HMPREF1058_RS11745 at 301.474 kb on - strand, within HMPREF1058_RS11745 at 301.502 kb on - strand, within HMPREF1058_RS11745 at 301.504 kb on - strand, within HMPREF1058_RS11745 at 301.656 kb on - strand, within HMPREF1058_RS11745 at 301.667 kb on + strand, within HMPREF1058_RS11745 at 301.696 kb on - strand at 301.701 kb on - strand at 301.733 kb on + strand at 301.735 kb on + strand at 301.902 kb on - strand, within HMPREF1058_RS11740 at 301.908 kb on - strand, within HMPREF1058_RS11740 at 301.917 kb on + strand, within HMPREF1058_RS11740 at 301.918 kb on - strand, within HMPREF1058_RS11740 at 301.937 kb on - strand, within HMPREF1058_RS11740 at 301.937 kb on - strand, within HMPREF1058_RS11740 at 301.986 kb on - strand, within HMPREF1058_RS11740 at 301.986 kb on - strand, within HMPREF1058_RS11740 at 301.989 kb on - strand, within HMPREF1058_RS11740 at 301.989 kb on - strand, within HMPREF1058_RS11740 at 302.018 kb on - strand, within HMPREF1058_RS11740 at 302.019 kb on + strand, within HMPREF1058_RS11740 at 302.019 kb on + strand, within HMPREF1058_RS11740 at 302.020 kb on - strand, within HMPREF1058_RS11740 at 302.020 kb on - strand, within HMPREF1058_RS11740 at 302.071 kb on - strand, within HMPREF1058_RS11740 at 302.073 kb on - strand, within HMPREF1058_RS11740 at 302.073 kb on - strand, within HMPREF1058_RS11740 at 302.079 kb on - strand, within HMPREF1058_RS11740
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 remove 299,297 - HMPREF1058_RS11755 0.20 +0.3 299,445 + HMPREF1058_RS11755 0.33 +1.7 299,445 + HMPREF1058_RS11755 0.33 +2.3 299,508 - HMPREF1058_RS11755 0.38 -0.8 299,514 - HMPREF1058_RS11755 0.39 +0.4 299,545 - HMPREF1058_RS11755 0.41 +1.0 299,664 - HMPREF1058_RS11755 0.51 +1.4 299,664 - HMPREF1058_RS11755 0.51 +0.1 299,699 + HMPREF1058_RS11755 0.54 -0.9 299,699 + HMPREF1058_RS11755 0.54 +0.5 299,700 - HMPREF1058_RS11755 0.54 +0.7 299,876 + HMPREF1058_RS11755 0.69 -0.5 299,876 + HMPREF1058_RS11755 0.69 +0.1 299,876 + HMPREF1058_RS11755 0.69 +0.4 299,876 + HMPREF1058_RS11755 0.69 +1.3 299,876 + HMPREF1058_RS11755 0.69 -0.6 299,876 + HMPREF1058_RS11755 0.69 +0.8 299,877 - HMPREF1058_RS11755 0.69 +0.5 299,877 - HMPREF1058_RS11755 0.69 -0.5 299,907 + HMPREF1058_RS11755 0.72 +0.4 299,922 - -1.3 299,923 + HMPREF1058_RS11755 0.73 -1.3 299,935 + HMPREF1058_RS11755 0.74 -0.0 299,936 - HMPREF1058_RS11755 0.74 +2.3 299,975 - HMPREF1058_RS11755 0.78 -2.0 300,111 + HMPREF1058_RS11755 0.89 +0.9 300,111 + HMPREF1058_RS11755 0.89 -0.3 300,112 - HMPREF1058_RS11755 0.89 +0.3 300,135 + +0.7 300,135 + -2.3 300,135 + +0.2 300,135 + +1.4 300,136 - -0.6 300,136 - -0.5 300,136 - -4.1 300,259 + +0.7 300,306 + -0.3 300,306 + +0.4 300,306 + -1.3 300,356 - +0.9 300,356 - +0.0 300,437 + HMPREF1058_RS11750 0.20 +0.3 300,438 - HMPREF1058_RS11750 0.20 -2.3 300,439 + HMPREF1058_RS11750 0.20 +0.5 300,439 + HMPREF1058_RS11750 0.20 -0.4 300,439 + HMPREF1058_RS11750 0.20 -1.2 300,440 - HMPREF1058_RS11750 0.20 +2.0 300,443 + HMPREF1058_RS11750 0.21 +1.8 300,443 + HMPREF1058_RS11750 0.21 +3.7 300,443 + HMPREF1058_RS11750 0.21 +0.1 300,444 - HMPREF1058_RS11750 0.21 +0.4 300,444 - HMPREF1058_RS11750 0.21 +0.3 300,603 + HMPREF1058_RS11750 0.40 +0.4 300,633 - HMPREF1058_RS11750 0.44 +0.2 300,785 + HMPREF1058_RS11750 0.63 +1.5 300,798 - HMPREF1058_RS11750 0.64 +0.4 300,828 + HMPREF1058_RS11750 0.68 +0.4 300,838 + HMPREF1058_RS11750 0.69 +0.3 300,838 + HMPREF1058_RS11750 0.69 -0.1 300,874 - HMPREF1058_RS11750 0.74 +0.9 300,875 + HMPREF1058_RS11750 0.74 +2.0 300,875 + HMPREF1058_RS11750 0.74 +0.2 300,875 + HMPREF1058_RS11750 0.74 +0.2 300,976 - HMPREF1058_RS11750 0.86 -0.5 301,083 - -2.8 301,091 + -2.2 301,092 - +0.1 301,109 - +1.6 301,158 + -3.1 301,158 + -3.4 301,224 - HMPREF1058_RS11745 0.20 -3.7 301,278 + HMPREF1058_RS11745 0.28 -2.8 301,322 + HMPREF1058_RS11745 0.35 +0.2 301,322 + HMPREF1058_RS11745 0.35 -0.2 301,323 - HMPREF1058_RS11745 0.35 -2.6 301,373 - HMPREF1058_RS11745 0.43 -2.1 301,392 + HMPREF1058_RS11745 0.46 -1.2 301,412 + HMPREF1058_RS11745 0.49 -2.2 301,448 + HMPREF1058_RS11745 0.54 -1.8 301,448 + HMPREF1058_RS11745 0.54 -1.4 301,473 + HMPREF1058_RS11745 0.58 -0.2 301,474 - HMPREF1058_RS11745 0.58 -1.8 301,502 - HMPREF1058_RS11745 0.62 -1.7 301,504 - HMPREF1058_RS11745 0.63 -1.1 301,656 - HMPREF1058_RS11745 0.86 -0.2 301,667 + HMPREF1058_RS11745 0.87 -3.1 301,696 - -1.2 301,701 - -3.7 301,733 + -1.2 301,735 + +2.1 301,902 - HMPREF1058_RS11740 0.18 -0.2 301,908 - HMPREF1058_RS11740 0.18 +0.8 301,917 + HMPREF1058_RS11740 0.19 -3.2 301,918 - HMPREF1058_RS11740 0.20 +1.8 301,937 - HMPREF1058_RS11740 0.22 +0.2 301,937 - HMPREF1058_RS11740 0.22 +0.1 301,986 - HMPREF1058_RS11740 0.27 -1.0 301,986 - HMPREF1058_RS11740 0.27 -0.4 301,989 - HMPREF1058_RS11740 0.28 +1.2 301,989 - HMPREF1058_RS11740 0.28 -0.8 302,018 - HMPREF1058_RS11740 0.31 +0.8 302,019 + HMPREF1058_RS11740 0.31 -0.2 302,019 + HMPREF1058_RS11740 0.31 -1.8 302,020 - HMPREF1058_RS11740 0.31 -2.8 302,020 - HMPREF1058_RS11740 0.31 -2.2 302,071 - HMPREF1058_RS11740 0.37 -1.6 302,073 - HMPREF1058_RS11740 0.38 +1.6 302,073 - HMPREF1058_RS11740 0.38 -0.9 302,079 - HMPREF1058_RS11740 0.38 +0.1
Or see this region's nucleotide sequence