Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11140 and HMPREF1058_RS11135 are separated by 310 nucleotides HMPREF1058_RS11135 and HMPREF1058_RS11130 are separated by 36 nucleotides
HMPREF1058_RS11140: HMPREF1058_RS11140 - DUF4859 domain-containing protein, at 458,800 to 459,810
_RS11140
HMPREF1058_RS11135: HMPREF1058_RS11135 - glycoside hydrolase family 97 catalytic domain-containing protein, at 460,121 to 462,844
_RS11135
HMPREF1058_RS11130: HMPREF1058_RS11130 - family 43 glycosylhydrolase, at 462,881 to 465,283
_RS11130
Position (kb) 460
461
462
463 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 459.157 kb on + strand, within HMPREF1058_RS11140 at 459.158 kb on - strand, within HMPREF1058_RS11140 at 459.158 kb on - strand, within HMPREF1058_RS11140 at 459.159 kb on + strand, within HMPREF1058_RS11140 at 459.195 kb on + strand, within HMPREF1058_RS11140 at 459.197 kb on + strand, within HMPREF1058_RS11140 at 459.201 kb on + strand, within HMPREF1058_RS11140 at 459.274 kb on - strand, within HMPREF1058_RS11140 at 459.274 kb on - strand, within HMPREF1058_RS11140 at 459.325 kb on + strand, within HMPREF1058_RS11140 at 459.325 kb on + strand, within HMPREF1058_RS11140 at 459.326 kb on - strand, within HMPREF1058_RS11140 at 459.367 kb on - strand, within HMPREF1058_RS11140 at 459.375 kb on - strand, within HMPREF1058_RS11140 at 459.377 kb on + strand, within HMPREF1058_RS11140 at 459.378 kb on - strand, within HMPREF1058_RS11140 at 459.378 kb on - strand, within HMPREF1058_RS11140 at 459.447 kb on - strand, within HMPREF1058_RS11140 at 459.447 kb on - strand, within HMPREF1058_RS11140 at 459.491 kb on + strand, within HMPREF1058_RS11140 at 459.492 kb on - strand, within HMPREF1058_RS11140 at 459.527 kb on + strand, within HMPREF1058_RS11140 at 459.528 kb on - strand, within HMPREF1058_RS11140 at 459.580 kb on - strand, within HMPREF1058_RS11140 at 459.591 kb on + strand, within HMPREF1058_RS11140 at 459.592 kb on - strand, within HMPREF1058_RS11140 at 459.651 kb on + strand, within HMPREF1058_RS11140 at 459.661 kb on + strand, within HMPREF1058_RS11140 at 459.709 kb on - strand, within HMPREF1058_RS11140 at 459.746 kb on + strand at 459.775 kb on + strand at 459.776 kb on - strand at 459.814 kb on - strand at 459.821 kb on - strand at 459.862 kb on + strand at 459.862 kb on + strand at 459.865 kb on + strand at 459.865 kb on + strand at 459.869 kb on - strand at 459.869 kb on - strand at 459.869 kb on - strand at 459.892 kb on - strand at 459.912 kb on + strand at 459.926 kb on - strand at 459.926 kb on - strand at 459.963 kb on - strand at 459.983 kb on + strand at 460.042 kb on + strand at 460.048 kb on - strand at 460.049 kb on + strand at 460.049 kb on + strand at 460.050 kb on - strand at 460.050 kb on - strand at 460.052 kb on + strand at 460.052 kb on + strand at 460.053 kb on - strand at 460.053 kb on - strand at 460.071 kb on - strand at 460.084 kb on + strand at 460.167 kb on + strand at 460.209 kb on - strand at 460.313 kb on - strand at 460.317 kb on + strand at 460.318 kb on - strand at 460.342 kb on + strand at 460.342 kb on + strand at 460.343 kb on - strand at 460.343 kb on - strand at 460.343 kb on - strand at 460.344 kb on + strand at 460.345 kb on - strand at 460.348 kb on - strand at 460.401 kb on + strand, within HMPREF1058_RS11135 at 460.401 kb on + strand, within HMPREF1058_RS11135 at 460.402 kb on - strand, within HMPREF1058_RS11135 at 460.402 kb on - strand, within HMPREF1058_RS11135 at 460.416 kb on - strand at 460.496 kb on + strand, within HMPREF1058_RS11135 at 460.497 kb on - strand, within HMPREF1058_RS11135 at 460.497 kb on - strand, within HMPREF1058_RS11135 at 460.523 kb on + strand, within HMPREF1058_RS11135 at 460.523 kb on + strand, within HMPREF1058_RS11135 at 460.550 kb on - strand, within HMPREF1058_RS11135 at 460.552 kb on - strand, within HMPREF1058_RS11135 at 460.621 kb on + strand, within HMPREF1058_RS11135 at 460.653 kb on + strand, within HMPREF1058_RS11135 at 460.653 kb on + strand, within HMPREF1058_RS11135 at 460.654 kb on - strand, within HMPREF1058_RS11135 at 460.654 kb on - strand, within HMPREF1058_RS11135 at 460.868 kb on + strand, within HMPREF1058_RS11135 at 460.869 kb on - strand, within HMPREF1058_RS11135 at 460.869 kb on - strand, within HMPREF1058_RS11135 at 460.869 kb on - strand, within HMPREF1058_RS11135 at 460.892 kb on - strand, within HMPREF1058_RS11135 at 460.943 kb on - strand, within HMPREF1058_RS11135 at 460.982 kb on + strand, within HMPREF1058_RS11135 at 460.983 kb on - strand, within HMPREF1058_RS11135 at 461.107 kb on + strand, within HMPREF1058_RS11135 at 461.107 kb on + strand, within HMPREF1058_RS11135 at 461.111 kb on + strand, within HMPREF1058_RS11135 at 461.112 kb on - strand, within HMPREF1058_RS11135 at 461.117 kb on + strand, within HMPREF1058_RS11135 at 461.118 kb on - strand, within HMPREF1058_RS11135 at 461.118 kb on - strand, within HMPREF1058_RS11135 at 461.118 kb on - strand, within HMPREF1058_RS11135 at 461.118 kb on - strand, within HMPREF1058_RS11135 at 461.121 kb on - strand, within HMPREF1058_RS11135 at 461.121 kb on - strand, within HMPREF1058_RS11135 at 461.177 kb on + strand, within HMPREF1058_RS11135 at 461.244 kb on - strand, within HMPREF1058_RS11135 at 461.287 kb on + strand, within HMPREF1058_RS11135 at 461.321 kb on - strand, within HMPREF1058_RS11135 at 461.431 kb on + strand, within HMPREF1058_RS11135 at 461.482 kb on + strand, within HMPREF1058_RS11135 at 461.487 kb on - strand, within HMPREF1058_RS11135 at 461.487 kb on - strand, within HMPREF1058_RS11135 at 461.494 kb on + strand, within HMPREF1058_RS11135 at 461.495 kb on - strand, within HMPREF1058_RS11135 at 461.555 kb on - strand, within HMPREF1058_RS11135 at 461.555 kb on - strand, within HMPREF1058_RS11135 at 461.557 kb on + strand, within HMPREF1058_RS11135 at 461.568 kb on - strand, within HMPREF1058_RS11135 at 461.585 kb on + strand, within HMPREF1058_RS11135 at 461.615 kb on + strand, within HMPREF1058_RS11135 at 461.617 kb on + strand, within HMPREF1058_RS11135 at 461.618 kb on - strand, within HMPREF1058_RS11135 at 461.666 kb on + strand, within HMPREF1058_RS11135 at 461.669 kb on + strand, within HMPREF1058_RS11135 at 461.714 kb on + strand, within HMPREF1058_RS11135 at 461.766 kb on - strand, within HMPREF1058_RS11135 at 461.857 kb on + strand, within HMPREF1058_RS11135 at 461.857 kb on + strand, within HMPREF1058_RS11135 at 461.891 kb on + strand, within HMPREF1058_RS11135 at 462.197 kb on + strand, within HMPREF1058_RS11135 at 462.198 kb on - strand, within HMPREF1058_RS11135 at 462.198 kb on - strand, within HMPREF1058_RS11135 at 462.234 kb on + strand, within HMPREF1058_RS11135 at 462.251 kb on - strand, within HMPREF1058_RS11135 at 462.370 kb on + strand, within HMPREF1058_RS11135 at 462.394 kb on + strand, within HMPREF1058_RS11135 at 462.497 kb on + strand, within HMPREF1058_RS11135 at 462.497 kb on + strand, within HMPREF1058_RS11135 at 462.497 kb on + strand, within HMPREF1058_RS11135 at 462.498 kb on - strand, within HMPREF1058_RS11135 at 462.498 kb on - strand, within HMPREF1058_RS11135 at 462.502 kb on - strand, within HMPREF1058_RS11135 at 462.538 kb on + strand, within HMPREF1058_RS11135 at 462.544 kb on + strand, within HMPREF1058_RS11135 at 462.553 kb on + strand, within HMPREF1058_RS11135 at 462.553 kb on + strand, within HMPREF1058_RS11135 at 462.554 kb on - strand at 462.638 kb on + strand at 462.662 kb on + strand at 462.764 kb on + strand at 462.775 kb on + strand at 462.842 kb on + strand at 462.887 kb on - strand at 462.887 kb on - strand at 463.028 kb on + strand at 463.028 kb on + strand at 463.032 kb on - strand at 463.033 kb on + strand at 463.033 kb on + strand at 463.033 kb on + strand at 463.033 kb on + strand at 463.034 kb on - strand at 463.034 kb on - strand at 463.034 kb on - strand at 463.037 kb on + strand at 463.038 kb on - strand at 463.175 kb on - strand, within HMPREF1058_RS11130 at 463.214 kb on - strand, within HMPREF1058_RS11130 at 463.263 kb on + strand, within HMPREF1058_RS11130 at 463.263 kb on + strand, within HMPREF1058_RS11130 at 463.388 kb on + strand, within HMPREF1058_RS11130 at 463.388 kb on + strand, within HMPREF1058_RS11130 at 463.389 kb on - strand, within HMPREF1058_RS11130 at 463.528 kb on + strand, within HMPREF1058_RS11130 at 463.529 kb on - strand, within HMPREF1058_RS11130 at 463.532 kb on + strand, within HMPREF1058_RS11130 at 463.563 kb on - strand, within HMPREF1058_RS11130 at 463.574 kb on + strand, within HMPREF1058_RS11130 at 463.621 kb on + strand, within HMPREF1058_RS11130 at 463.622 kb on - strand, within HMPREF1058_RS11130 at 463.672 kb on + strand, within HMPREF1058_RS11130 at 463.673 kb on - strand, within HMPREF1058_RS11130 at 463.698 kb on - strand, within HMPREF1058_RS11130 at 463.698 kb on - strand, within HMPREF1058_RS11130 at 463.699 kb on + strand, within HMPREF1058_RS11130 at 463.707 kb on - strand, within HMPREF1058_RS11130
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 remove 459,157 + HMPREF1058_RS11140 0.35 -0.1 459,158 - HMPREF1058_RS11140 0.35 +2.7 459,158 - HMPREF1058_RS11140 0.35 -0.9 459,159 + HMPREF1058_RS11140 0.36 +0.1 459,195 + HMPREF1058_RS11140 0.39 +0.8 459,197 + HMPREF1058_RS11140 0.39 -0.1 459,201 + HMPREF1058_RS11140 0.40 -1.2 459,274 - HMPREF1058_RS11140 0.47 -1.0 459,274 - HMPREF1058_RS11140 0.47 -0.3 459,325 + HMPREF1058_RS11140 0.52 +1.0 459,325 + HMPREF1058_RS11140 0.52 +1.8 459,326 - HMPREF1058_RS11140 0.52 -0.6 459,367 - HMPREF1058_RS11140 0.56 +0.5 459,375 - HMPREF1058_RS11140 0.57 +0.0 459,377 + HMPREF1058_RS11140 0.57 +0.9 459,378 - HMPREF1058_RS11140 0.57 -0.3 459,378 - HMPREF1058_RS11140 0.57 -1.1 459,447 - HMPREF1058_RS11140 0.64 +1.1 459,447 - HMPREF1058_RS11140 0.64 +0.2 459,491 + HMPREF1058_RS11140 0.68 +0.2 459,492 - HMPREF1058_RS11140 0.68 -1.2 459,527 + HMPREF1058_RS11140 0.72 -1.8 459,528 - HMPREF1058_RS11140 0.72 +3.3 459,580 - HMPREF1058_RS11140 0.77 -0.2 459,591 + HMPREF1058_RS11140 0.78 +3.2 459,592 - HMPREF1058_RS11140 0.78 +0.3 459,651 + HMPREF1058_RS11140 0.84 -1.2 459,661 + HMPREF1058_RS11140 0.85 +1.0 459,709 - HMPREF1058_RS11140 0.90 -0.6 459,746 + +1.0 459,775 + +2.1 459,776 - +0.6 459,814 - -3.6 459,821 - +0.1 459,862 + +0.2 459,862 + -0.8 459,865 + +3.1 459,865 + -1.3 459,869 - +0.8 459,869 - +0.8 459,869 - +0.8 459,892 - +0.6 459,912 + -2.9 459,926 - +1.6 459,926 - -2.0 459,963 - -0.2 459,983 + -0.9 460,042 + +1.1 460,048 - -0.1 460,049 + +1.4 460,049 + -0.2 460,050 - +0.2 460,050 - +0.6 460,052 + +2.2 460,052 + +1.5 460,053 - -1.7 460,053 - -2.2 460,071 - +1.7 460,084 + +0.0 460,167 + +1.6 460,209 - +1.6 460,313 - -0.2 460,317 + -0.5 460,318 - +0.3 460,342 + -0.2 460,342 + -5.1 460,343 - +0.7 460,343 - +0.5 460,343 - -0.2 460,344 + +2.0 460,345 - +0.2 460,348 - +2.2 460,401 + HMPREF1058_RS11135 0.10 -0.2 460,401 + HMPREF1058_RS11135 0.10 -0.2 460,402 - HMPREF1058_RS11135 0.10 +2.5 460,402 - HMPREF1058_RS11135 0.10 +0.6 460,416 - +0.8 460,496 + HMPREF1058_RS11135 0.14 +0.1 460,497 - HMPREF1058_RS11135 0.14 -0.8 460,497 - HMPREF1058_RS11135 0.14 +1.0 460,523 + HMPREF1058_RS11135 0.15 -1.7 460,523 + HMPREF1058_RS11135 0.15 -1.3 460,550 - HMPREF1058_RS11135 0.16 -1.4 460,552 - HMPREF1058_RS11135 0.16 -3.9 460,621 + HMPREF1058_RS11135 0.18 -2.6 460,653 + HMPREF1058_RS11135 0.20 -0.1 460,653 + HMPREF1058_RS11135 0.20 -3.4 460,654 - HMPREF1058_RS11135 0.20 -0.4 460,654 - HMPREF1058_RS11135 0.20 -1.8 460,868 + HMPREF1058_RS11135 0.27 +0.5 460,869 - HMPREF1058_RS11135 0.27 +0.1 460,869 - HMPREF1058_RS11135 0.27 +0.9 460,869 - HMPREF1058_RS11135 0.27 +0.2 460,892 - HMPREF1058_RS11135 0.28 +0.4 460,943 - HMPREF1058_RS11135 0.30 -4.6 460,982 + HMPREF1058_RS11135 0.32 +0.0 460,983 - HMPREF1058_RS11135 0.32 +0.4 461,107 + HMPREF1058_RS11135 0.36 +1.1 461,107 + HMPREF1058_RS11135 0.36 -0.6 461,111 + HMPREF1058_RS11135 0.36 +0.3 461,112 - HMPREF1058_RS11135 0.36 -1.2 461,117 + HMPREF1058_RS11135 0.37 +0.1 461,118 - HMPREF1058_RS11135 0.37 -0.8 461,118 - HMPREF1058_RS11135 0.37 +0.6 461,118 - HMPREF1058_RS11135 0.37 +0.6 461,118 - HMPREF1058_RS11135 0.37 +1.1 461,121 - HMPREF1058_RS11135 0.37 +2.1 461,121 - HMPREF1058_RS11135 0.37 -1.2 461,177 + HMPREF1058_RS11135 0.39 -0.4 461,244 - HMPREF1058_RS11135 0.41 -1.5 461,287 + HMPREF1058_RS11135 0.43 +0.5 461,321 - HMPREF1058_RS11135 0.44 +0.8 461,431 + HMPREF1058_RS11135 0.48 -1.2 461,482 + HMPREF1058_RS11135 0.50 -2.2 461,487 - HMPREF1058_RS11135 0.50 +0.1 461,487 - HMPREF1058_RS11135 0.50 -1.8 461,494 + HMPREF1058_RS11135 0.50 -0.5 461,495 - HMPREF1058_RS11135 0.50 -0.6 461,555 - HMPREF1058_RS11135 0.53 +0.7 461,555 - HMPREF1058_RS11135 0.53 +1.9 461,557 + HMPREF1058_RS11135 0.53 -2.0 461,568 - HMPREF1058_RS11135 0.53 +0.7 461,585 + HMPREF1058_RS11135 0.54 +0.6 461,615 + HMPREF1058_RS11135 0.55 +0.9 461,617 + HMPREF1058_RS11135 0.55 -0.2 461,618 - HMPREF1058_RS11135 0.55 -0.6 461,666 + HMPREF1058_RS11135 0.57 -1.2 461,669 + HMPREF1058_RS11135 0.57 -0.4 461,714 + HMPREF1058_RS11135 0.58 +0.9 461,766 - HMPREF1058_RS11135 0.60 -1.4 461,857 + HMPREF1058_RS11135 0.64 -0.4 461,857 + HMPREF1058_RS11135 0.64 -1.0 461,891 + HMPREF1058_RS11135 0.65 -1.8 462,197 + HMPREF1058_RS11135 0.76 -1.8 462,198 - HMPREF1058_RS11135 0.76 -0.2 462,198 - HMPREF1058_RS11135 0.76 -2.0 462,234 + HMPREF1058_RS11135 0.78 -1.8 462,251 - HMPREF1058_RS11135 0.78 +0.2 462,370 + HMPREF1058_RS11135 0.83 -0.1 462,394 + HMPREF1058_RS11135 0.83 -0.3 462,497 + HMPREF1058_RS11135 0.87 +0.7 462,497 + HMPREF1058_RS11135 0.87 -0.1 462,497 + HMPREF1058_RS11135 0.87 +0.8 462,498 - HMPREF1058_RS11135 0.87 -0.8 462,498 - HMPREF1058_RS11135 0.87 -2.2 462,502 - HMPREF1058_RS11135 0.87 +0.7 462,538 + HMPREF1058_RS11135 0.89 +0.4 462,544 + HMPREF1058_RS11135 0.89 -1.2 462,553 + HMPREF1058_RS11135 0.89 +0.2 462,553 + HMPREF1058_RS11135 0.89 +0.4 462,554 - -0.2 462,638 + -0.7 462,662 + -0.8 462,764 + -0.8 462,775 + +1.1 462,842 + -2.6 462,887 - +1.1 462,887 - -0.2 463,028 + +0.8 463,028 + -0.2 463,032 - -0.7 463,033 + -0.1 463,033 + +1.8 463,033 + +1.0 463,033 + -0.5 463,034 - +0.1 463,034 - +0.3 463,034 - -1.2 463,037 + -0.4 463,038 - +1.6 463,175 - HMPREF1058_RS11130 0.12 -1.2 463,214 - HMPREF1058_RS11130 0.14 -1.2 463,263 + HMPREF1058_RS11130 0.16 -0.0 463,263 + HMPREF1058_RS11130 0.16 +1.4 463,388 + HMPREF1058_RS11130 0.21 +0.6 463,388 + HMPREF1058_RS11130 0.21 +0.3 463,389 - HMPREF1058_RS11130 0.21 -1.5 463,528 + HMPREF1058_RS11130 0.27 +0.9 463,529 - HMPREF1058_RS11130 0.27 -2.0 463,532 + HMPREF1058_RS11130 0.27 -0.1 463,563 - HMPREF1058_RS11130 0.28 -1.6 463,574 + HMPREF1058_RS11130 0.29 -1.1 463,621 + HMPREF1058_RS11130 0.31 -1.5 463,622 - HMPREF1058_RS11130 0.31 -0.4 463,672 + HMPREF1058_RS11130 0.33 +0.1 463,673 - HMPREF1058_RS11130 0.33 +0.8 463,698 - HMPREF1058_RS11130 0.34 +0.1 463,698 - HMPREF1058_RS11130 0.34 +1.0 463,699 + HMPREF1058_RS11130 0.34 +3.5 463,707 - HMPREF1058_RS11130 0.34 +1.1
Or see this region's nucleotide sequence