Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10465

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10470 and HMPREF1058_RS10465 are separated by 305 nucleotidesHMPREF1058_RS10465 and HMPREF1058_RS10460 are separated by 142 nucleotides HMPREF1058_RS10470: HMPREF1058_RS10470 - IS1182 family transposase, at 662,573 to 663,877 _RS10470 HMPREF1058_RS10465: HMPREF1058_RS10465 - sugar kinase, at 664,183 to 665,247 _RS10465 HMPREF1058_RS10460: HMPREF1058_RS10460 - NAD-dependent epimerase/dehydratase family protein, at 665,390 to 666,343 _RS10460 Position (kb) 664 665 666Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 664.021 kb on + strandat 664.054 kb on + strandat 664.054 kb on + strandat 664.054 kb on + strandat 664.055 kb on - strandat 664.068 kb on - strandat 664.072 kb on - strandat 664.076 kb on + strandat 664.076 kb on + strandat 664.098 kb on + strandat 664.219 kb on + strandat 664.264 kb on + strandat 664.264 kb on + strandat 664.264 kb on + strandat 664.265 kb on - strandat 664.358 kb on - strand, within HMPREF1058_RS10465at 664.406 kb on + strand, within HMPREF1058_RS10465at 664.434 kb on + strand, within HMPREF1058_RS10465at 664.434 kb on + strand, within HMPREF1058_RS10465at 664.482 kb on + strand, within HMPREF1058_RS10465at 664.483 kb on - strand, within HMPREF1058_RS10465at 664.571 kb on + strand, within HMPREF1058_RS10465at 664.625 kb on + strand, within HMPREF1058_RS10465at 664.656 kb on + strand, within HMPREF1058_RS10465at 664.657 kb on - strand, within HMPREF1058_RS10465at 664.657 kb on - strand, within HMPREF1058_RS10465at 664.816 kb on + strand, within HMPREF1058_RS10465at 664.914 kb on - strand, within HMPREF1058_RS10465at 664.914 kb on - strand, within HMPREF1058_RS10465at 664.915 kb on + strand, within HMPREF1058_RS10465at 664.915 kb on + strand, within HMPREF1058_RS10465at 664.918 kb on + strand, within HMPREF1058_RS10465at 664.983 kb on - strandat 664.986 kb on + strand, within HMPREF1058_RS10465at 665.027 kb on - strand, within HMPREF1058_RS10465at 665.108 kb on - strand, within HMPREF1058_RS10465at 665.108 kb on - strand, within HMPREF1058_RS10465at 665.130 kb on - strand, within HMPREF1058_RS10465at 665.194 kb on + strandat 665.194 kb on + strandat 665.195 kb on - strandat 665.233 kb on - strandat 665.247 kb on + strandat 665.250 kb on + strandat 665.251 kb on - strandat 665.303 kb on + strandat 665.304 kb on - strandat 665.304 kb on - strandat 665.349 kb on + strandat 665.355 kb on - strandat 665.369 kb on + strandat 665.384 kb on - strandat 665.391 kb on + strandat 665.412 kb on - strandat 665.444 kb on + strandat 665.452 kb on - strandat 665.541 kb on - strand, within HMPREF1058_RS10460at 665.569 kb on + strand, within HMPREF1058_RS10460at 665.572 kb on - strand, within HMPREF1058_RS10460at 665.572 kb on - strand, within HMPREF1058_RS10460at 665.587 kb on + strand, within HMPREF1058_RS10460at 665.587 kb on + strand, within HMPREF1058_RS10460at 665.590 kb on - strand, within HMPREF1058_RS10460at 665.594 kb on - strand, within HMPREF1058_RS10460at 665.646 kb on - strand, within HMPREF1058_RS10460at 665.703 kb on + strand, within HMPREF1058_RS10460at 665.703 kb on + strand, within HMPREF1058_RS10460at 665.703 kb on + strand, within HMPREF1058_RS10460at 665.703 kb on + strand, within HMPREF1058_RS10460at 665.704 kb on - strand, within HMPREF1058_RS10460at 665.711 kb on - strand, within HMPREF1058_RS10460at 665.760 kb on - strand, within HMPREF1058_RS10460at 665.770 kb on - strand, within HMPREF1058_RS10460at 665.780 kb on + strand, within HMPREF1058_RS10460at 665.828 kb on + strand, within HMPREF1058_RS10460at 665.878 kb on - strand, within HMPREF1058_RS10460at 665.904 kb on - strand, within HMPREF1058_RS10460at 665.919 kb on + strand, within HMPREF1058_RS10460at 665.919 kb on + strand, within HMPREF1058_RS10460at 665.920 kb on - strand, within HMPREF1058_RS10460at 665.920 kb on - strand, within HMPREF1058_RS10460at 666.042 kb on - strand, within HMPREF1058_RS10460at 666.110 kb on + strand, within HMPREF1058_RS10460at 666.126 kb on + strand, within HMPREF1058_RS10460at 666.146 kb on - strand, within HMPREF1058_RS10460at 666.188 kb on + strand, within HMPREF1058_RS10460at 666.188 kb on + strand, within HMPREF1058_RS10460at 666.189 kb on - strand, within HMPREF1058_RS10460at 666.189 kb on - strand, within HMPREF1058_RS10460

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4
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664,021 + -0.6
664,054 + -0.3
664,054 + -0.4
664,054 + -1.3
664,055 - -1.3
664,068 - -1.0
664,072 - +1.5
664,076 + -0.6
664,076 + -2.3
664,098 + -0.4
664,219 + +0.9
664,264 + -0.0
664,264 + +1.9
664,264 + +0.4
664,265 - +0.9
664,358 - HMPREF1058_RS10465 0.16 -1.3
664,406 + HMPREF1058_RS10465 0.21 -1.3
664,434 + HMPREF1058_RS10465 0.24 -1.3
664,434 + HMPREF1058_RS10465 0.24 +0.4
664,482 + HMPREF1058_RS10465 0.28 +0.3
664,483 - HMPREF1058_RS10465 0.28 -0.1
664,571 + HMPREF1058_RS10465 0.36 +0.3
664,625 + HMPREF1058_RS10465 0.42 -0.6
664,656 + HMPREF1058_RS10465 0.44 +1.7
664,657 - HMPREF1058_RS10465 0.45 -0.5
664,657 - HMPREF1058_RS10465 0.45 +0.3
664,816 + HMPREF1058_RS10465 0.59 +1.2
664,914 - HMPREF1058_RS10465 0.69 -0.5
664,914 - HMPREF1058_RS10465 0.69 +0.8
664,915 + HMPREF1058_RS10465 0.69 +1.7
664,915 + HMPREF1058_RS10465 0.69 +0.1
664,918 + HMPREF1058_RS10465 0.69 -1.6
664,983 - -1.3
664,986 + HMPREF1058_RS10465 0.75 +1.1
665,027 - HMPREF1058_RS10465 0.79 +0.6
665,108 - HMPREF1058_RS10465 0.87 -0.6
665,108 - HMPREF1058_RS10465 0.87 +1.5
665,130 - HMPREF1058_RS10465 0.89 -2.1
665,194 + +0.5
665,194 + +0.1
665,195 - +0.2
665,233 - -0.3
665,247 + +0.3
665,250 + +0.3
665,251 - -0.7
665,303 + -0.6
665,304 - -1.9
665,304 - +1.2
665,349 + -0.2
665,355 - +1.1
665,369 + -1.9
665,384 - -1.3
665,391 + -0.4
665,412 - +4.7
665,444 + -0.8
665,452 - -2.0
665,541 - HMPREF1058_RS10460 0.16 -0.9
665,569 + HMPREF1058_RS10460 0.19 -2.0
665,572 - HMPREF1058_RS10460 0.19 -2.3
665,572 - HMPREF1058_RS10460 0.19 -1.1
665,587 + HMPREF1058_RS10460 0.21 -1.8
665,587 + HMPREF1058_RS10460 0.21 -0.7
665,590 - HMPREF1058_RS10460 0.21 -1.1
665,594 - HMPREF1058_RS10460 0.21 -0.6
665,646 - HMPREF1058_RS10460 0.27 -1.0
665,703 + HMPREF1058_RS10460 0.33 -0.5
665,703 + HMPREF1058_RS10460 0.33 -0.4
665,703 + HMPREF1058_RS10460 0.33 -1.6
665,703 + HMPREF1058_RS10460 0.33 -3.6
665,704 - HMPREF1058_RS10460 0.33 -1.7
665,711 - HMPREF1058_RS10460 0.34 +1.3
665,760 - HMPREF1058_RS10460 0.39 +1.3
665,770 - HMPREF1058_RS10460 0.40 -0.3
665,780 + HMPREF1058_RS10460 0.41 +0.5
665,828 + HMPREF1058_RS10460 0.46 -0.0
665,878 - HMPREF1058_RS10460 0.51 -2.2
665,904 - HMPREF1058_RS10460 0.54 +0.4
665,919 + HMPREF1058_RS10460 0.55 +0.9
665,919 + HMPREF1058_RS10460 0.55 -0.4
665,920 - HMPREF1058_RS10460 0.56 -1.2
665,920 - HMPREF1058_RS10460 0.56 +1.3
666,042 - HMPREF1058_RS10460 0.68 -0.7
666,110 + HMPREF1058_RS10460 0.75 -0.7
666,126 + HMPREF1058_RS10460 0.77 -0.4
666,146 - HMPREF1058_RS10460 0.79 +2.2
666,188 + HMPREF1058_RS10460 0.84 -0.6
666,188 + HMPREF1058_RS10460 0.84 -0.3
666,189 - HMPREF1058_RS10460 0.84 -1.4
666,189 - HMPREF1058_RS10460 0.84 +0.8

Or see this region's nucleotide sequence