Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08970 and HMPREF1058_RS08965 are separated by 187 nucleotides HMPREF1058_RS08965 and HMPREF1058_RS08960 are separated by 123 nucleotides
HMPREF1058_RS08970: HMPREF1058_RS08970 - endonuclease/exonuclease/phosphatase family protein, at 978,026 to 978,871
_RS08970
HMPREF1058_RS08965: HMPREF1058_RS08965 - glycoside hydrolase family 97 protein, at 979,059 to 981,074
_RS08965
HMPREF1058_RS08960: HMPREF1058_RS08960 - MFS transporter, at 981,198 to 982,496
_RS08960
Position (kb) 979
980
981
982 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 978.187 kb on + strand, within HMPREF1058_RS08970 at 978.351 kb on - strand, within HMPREF1058_RS08970 at 978.402 kb on + strand, within HMPREF1058_RS08970 at 978.562 kb on - strand, within HMPREF1058_RS08970 at 978.632 kb on + strand, within HMPREF1058_RS08970 at 978.676 kb on + strand, within HMPREF1058_RS08970 at 978.676 kb on + strand, within HMPREF1058_RS08970 at 978.676 kb on + strand, within HMPREF1058_RS08970 at 978.709 kb on + strand, within HMPREF1058_RS08970 at 978.909 kb on - strand at 978.933 kb on - strand at 978.960 kb on + strand at 978.961 kb on - strand at 978.964 kb on + strand at 978.964 kb on + strand at 978.964 kb on + strand at 978.964 kb on + strand at 978.965 kb on - strand at 978.979 kb on + strand at 979.010 kb on + strand at 979.029 kb on - strand at 979.058 kb on + strand at 979.058 kb on + strand at 979.059 kb on - strand at 979.059 kb on - strand at 979.069 kb on - strand at 979.069 kb on - strand at 979.069 kb on - strand at 979.074 kb on + strand at 979.077 kb on + strand at 979.082 kb on - strand at 979.082 kb on - strand at 979.157 kb on - strand at 979.205 kb on - strand at 979.343 kb on + strand, within HMPREF1058_RS08965 at 979.364 kb on + strand, within HMPREF1058_RS08965 at 979.563 kb on + strand, within HMPREF1058_RS08965 at 979.564 kb on - strand, within HMPREF1058_RS08965 at 979.646 kb on - strand, within HMPREF1058_RS08965 at 979.646 kb on - strand, within HMPREF1058_RS08965 at 979.647 kb on + strand, within HMPREF1058_RS08965 at 979.647 kb on + strand, within HMPREF1058_RS08965 at 979.822 kb on + strand, within HMPREF1058_RS08965 at 979.823 kb on - strand, within HMPREF1058_RS08965 at 979.913 kb on - strand, within HMPREF1058_RS08965 at 979.913 kb on - strand, within HMPREF1058_RS08965 at 979.916 kb on + strand, within HMPREF1058_RS08965 at 979.917 kb on - strand, within HMPREF1058_RS08965 at 979.998 kb on + strand, within HMPREF1058_RS08965 at 979.998 kb on + strand, within HMPREF1058_RS08965 at 979.999 kb on - strand, within HMPREF1058_RS08965 at 979.999 kb on - strand, within HMPREF1058_RS08965 at 980.002 kb on + strand, within HMPREF1058_RS08965 at 980.027 kb on - strand, within HMPREF1058_RS08965 at 980.096 kb on + strand, within HMPREF1058_RS08965 at 980.227 kb on - strand, within HMPREF1058_RS08965 at 980.236 kb on - strand, within HMPREF1058_RS08965 at 980.320 kb on + strand, within HMPREF1058_RS08965 at 980.320 kb on + strand, within HMPREF1058_RS08965 at 980.387 kb on + strand, within HMPREF1058_RS08965 at 980.411 kb on + strand, within HMPREF1058_RS08965 at 980.415 kb on + strand, within HMPREF1058_RS08965 at 980.538 kb on + strand, within HMPREF1058_RS08965 at 980.541 kb on - strand, within HMPREF1058_RS08965 at 980.870 kb on + strand at 980.929 kb on - strand at 981.063 kb on - strand at 981.105 kb on + strand at 981.151 kb on + strand at 981.151 kb on + strand at 981.152 kb on - strand at 981.152 kb on - strand at 981.182 kb on + strand at 981.185 kb on + strand at 981.185 kb on + strand at 981.185 kb on + strand at 981.193 kb on + strand at 981.194 kb on - strand at 981.196 kb on - strand at 981.299 kb on + strand at 981.318 kb on + strand at 981.319 kb on - strand at 981.319 kb on - strand at 981.350 kb on - strand, within HMPREF1058_RS08960 at 981.420 kb on + strand, within HMPREF1058_RS08960 at 981.421 kb on - strand, within HMPREF1058_RS08960 at 981.588 kb on + strand, within HMPREF1058_RS08960 at 981.589 kb on - strand, within HMPREF1058_RS08960 at 981.589 kb on - strand, within HMPREF1058_RS08960 at 981.589 kb on - strand, within HMPREF1058_RS08960 at 981.590 kb on + strand, within HMPREF1058_RS08960 at 981.590 kb on + strand, within HMPREF1058_RS08960 at 981.624 kb on + strand, within HMPREF1058_RS08960 at 981.624 kb on + strand at 981.624 kb on + strand, within HMPREF1058_RS08960 at 981.624 kb on + strand, within HMPREF1058_RS08960 at 981.624 kb on + strand, within HMPREF1058_RS08960 at 981.625 kb on - strand, within HMPREF1058_RS08960 at 981.626 kb on + strand, within HMPREF1058_RS08960 at 981.628 kb on + strand, within HMPREF1058_RS08960 at 981.649 kb on - strand, within HMPREF1058_RS08960 at 981.739 kb on + strand, within HMPREF1058_RS08960 at 981.802 kb on - strand, within HMPREF1058_RS08960 at 981.806 kb on + strand, within HMPREF1058_RS08960 at 981.813 kb on - strand, within HMPREF1058_RS08960 at 981.903 kb on - strand, within HMPREF1058_RS08960 at 981.918 kb on + strand, within HMPREF1058_RS08960 at 981.940 kb on + strand, within HMPREF1058_RS08960 at 982.048 kb on - strand, within HMPREF1058_RS08960
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 remove 978,187 + HMPREF1058_RS08970 0.19 +0.8 978,351 - HMPREF1058_RS08970 0.38 -3.1 978,402 + HMPREF1058_RS08970 0.44 -0.7 978,562 - HMPREF1058_RS08970 0.63 +1.1 978,632 + HMPREF1058_RS08970 0.72 -0.3 978,676 + HMPREF1058_RS08970 0.77 +0.6 978,676 + HMPREF1058_RS08970 0.77 -0.5 978,676 + HMPREF1058_RS08970 0.77 -0.6 978,709 + HMPREF1058_RS08970 0.81 -1.9 978,909 - +0.8 978,933 - -1.2 978,960 + -1.5 978,961 - -3.1 978,964 + +0.1 978,964 + -0.1 978,964 + -0.3 978,964 + -1.5 978,965 - +1.7 978,979 + -0.9 979,010 + -1.9 979,029 - +0.3 979,058 + -1.1 979,058 + -0.5 979,059 - +1.3 979,059 - +4.9 979,069 - -0.1 979,069 - -0.3 979,069 - +0.2 979,074 + +0.5 979,077 + -0.3 979,082 - -0.6 979,082 - -0.3 979,157 - +0.1 979,205 - -1.0 979,343 + HMPREF1058_RS08965 0.14 +0.7 979,364 + HMPREF1058_RS08965 0.15 +2.7 979,563 + HMPREF1058_RS08965 0.25 +0.7 979,564 - HMPREF1058_RS08965 0.25 -5.5 979,646 - HMPREF1058_RS08965 0.29 +1.9 979,646 - HMPREF1058_RS08965 0.29 -2.1 979,647 + HMPREF1058_RS08965 0.29 +0.7 979,647 + HMPREF1058_RS08965 0.29 -0.2 979,822 + HMPREF1058_RS08965 0.38 -0.6 979,823 - HMPREF1058_RS08965 0.38 +0.1 979,913 - HMPREF1058_RS08965 0.42 +0.8 979,913 - HMPREF1058_RS08965 0.42 +1.2 979,916 + HMPREF1058_RS08965 0.43 -0.7 979,917 - HMPREF1058_RS08965 0.43 -0.3 979,998 + HMPREF1058_RS08965 0.47 -0.2 979,998 + HMPREF1058_RS08965 0.47 +0.4 979,999 - HMPREF1058_RS08965 0.47 -1.3 979,999 - HMPREF1058_RS08965 0.47 +1.0 980,002 + HMPREF1058_RS08965 0.47 -0.4 980,027 - HMPREF1058_RS08965 0.48 +1.4 980,096 + HMPREF1058_RS08965 0.51 -1.1 980,227 - HMPREF1058_RS08965 0.58 +3.2 980,236 - HMPREF1058_RS08965 0.58 -1.2 980,320 + HMPREF1058_RS08965 0.63 +3.5 980,320 + HMPREF1058_RS08965 0.63 -0.3 980,387 + HMPREF1058_RS08965 0.66 +1.8 980,411 + HMPREF1058_RS08965 0.67 +1.7 980,415 + HMPREF1058_RS08965 0.67 +0.5 980,538 + HMPREF1058_RS08965 0.73 +0.1 980,541 - HMPREF1058_RS08965 0.74 -0.3 980,870 + -1.3 980,929 - -3.1 981,063 - -1.0 981,105 + -1.1 981,151 + -0.3 981,151 + -1.3 981,152 - +0.2 981,152 - -2.0 981,182 + -2.3 981,185 + -2.3 981,185 + +1.4 981,185 + -0.9 981,193 + +0.1 981,194 - +1.3 981,196 - +0.4 981,299 + +1.6 981,318 + -0.7 981,319 - -2.3 981,319 - +0.3 981,350 - HMPREF1058_RS08960 0.12 +1.2 981,420 + HMPREF1058_RS08960 0.17 -0.6 981,421 - HMPREF1058_RS08960 0.17 -3.1 981,588 + HMPREF1058_RS08960 0.30 -1.3 981,589 - HMPREF1058_RS08960 0.30 -0.5 981,589 - HMPREF1058_RS08960 0.30 -0.2 981,589 - HMPREF1058_RS08960 0.30 -0.3 981,590 + HMPREF1058_RS08960 0.30 -3.1 981,590 + HMPREF1058_RS08960 0.30 -2.1 981,624 + HMPREF1058_RS08960 0.33 +0.7 981,624 + -1.3 981,624 + HMPREF1058_RS08960 0.33 +0.5 981,624 + HMPREF1058_RS08960 0.33 +0.0 981,624 + HMPREF1058_RS08960 0.33 +3.2 981,625 - HMPREF1058_RS08960 0.33 -2.2 981,626 + HMPREF1058_RS08960 0.33 -0.2 981,628 + HMPREF1058_RS08960 0.33 +1.3 981,649 - HMPREF1058_RS08960 0.35 +2.9 981,739 + HMPREF1058_RS08960 0.42 +0.2 981,802 - HMPREF1058_RS08960 0.46 -3.1 981,806 + HMPREF1058_RS08960 0.47 +0.6 981,813 - HMPREF1058_RS08960 0.47 -1.3 981,903 - HMPREF1058_RS08960 0.54 -1.3 981,918 + HMPREF1058_RS08960 0.55 -0.2 981,940 + HMPREF1058_RS08960 0.57 -1.3 982,048 - HMPREF1058_RS08960 0.65 -0.3
Or see this region's nucleotide sequence