Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08115

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS08120 and HMPREF1058_RS08115 are separated by 141 nucleotidesHMPREF1058_RS08115 and HMPREF1058_RS08110 are separated by 153 nucleotides HMPREF1058_RS08120: HMPREF1058_RS08120 - hypothetical protein, at 44,876 to 47,512 _RS08120 HMPREF1058_RS08115: HMPREF1058_RS08115 - glycoside hydrolase family 97 protein, at 47,654 to 49,591 _RS08115 HMPREF1058_RS08110: HMPREF1058_RS08110 - glycosyl hydrolase 43 family protein, at 49,745 to 51,394 _RS08110 Position (kb) 47 48 49 50Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 46.716 kb on - strand, within HMPREF1058_RS08120at 46.724 kb on - strand, within HMPREF1058_RS08120at 46.754 kb on + strand, within HMPREF1058_RS08120at 46.755 kb on - strand, within HMPREF1058_RS08120at 46.771 kb on - strand, within HMPREF1058_RS08120at 46.774 kb on + strand, within HMPREF1058_RS08120at 46.775 kb on - strand, within HMPREF1058_RS08120at 46.922 kb on - strand, within HMPREF1058_RS08120at 46.933 kb on + strand, within HMPREF1058_RS08120at 46.934 kb on - strand, within HMPREF1058_RS08120at 47.002 kb on + strand, within HMPREF1058_RS08120at 47.003 kb on - strand, within HMPREF1058_RS08120at 47.011 kb on + strand, within HMPREF1058_RS08120at 47.038 kb on + strand, within HMPREF1058_RS08120at 47.129 kb on - strand, within HMPREF1058_RS08120at 47.292 kb on + strandat 47.301 kb on + strandat 47.333 kb on + strandat 47.366 kb on - strandat 47.395 kb on - strandat 47.395 kb on - strandat 47.395 kb on - strandat 47.395 kb on - strandat 47.396 kb on + strandat 47.409 kb on - strandat 47.429 kb on + strandat 47.496 kb on - strandat 47.583 kb on + strandat 47.584 kb on - strandat 47.633 kb on - strandat 47.674 kb on - strandat 47.678 kb on + strandat 47.719 kb on + strandat 47.806 kb on - strandat 47.806 kb on - strandat 47.820 kb on - strandat 47.875 kb on + strand, within HMPREF1058_RS08115at 47.876 kb on - strand, within HMPREF1058_RS08115at 47.914 kb on - strand, within HMPREF1058_RS08115at 48.001 kb on + strand, within HMPREF1058_RS08115at 48.001 kb on + strand, within HMPREF1058_RS08115at 48.001 kb on + strand, within HMPREF1058_RS08115at 48.002 kb on - strand, within HMPREF1058_RS08115at 48.021 kb on - strand, within HMPREF1058_RS08115at 48.039 kb on - strand, within HMPREF1058_RS08115at 48.065 kb on + strand, within HMPREF1058_RS08115at 48.176 kb on + strand, within HMPREF1058_RS08115at 48.179 kb on - strand, within HMPREF1058_RS08115at 48.380 kb on - strand, within HMPREF1058_RS08115at 48.398 kb on + strand, within HMPREF1058_RS08115at 48.445 kb on + strand, within HMPREF1058_RS08115at 48.491 kb on - strand, within HMPREF1058_RS08115at 48.572 kb on - strand, within HMPREF1058_RS08115at 48.574 kb on + strand, within HMPREF1058_RS08115at 48.623 kb on - strand, within HMPREF1058_RS08115at 48.623 kb on - strand, within HMPREF1058_RS08115at 48.629 kb on + strand, within HMPREF1058_RS08115at 48.631 kb on + strand, within HMPREF1058_RS08115at 48.632 kb on - strand, within HMPREF1058_RS08115at 48.653 kb on + strand, within HMPREF1058_RS08115at 48.653 kb on + strand, within HMPREF1058_RS08115at 48.653 kb on + strand, within HMPREF1058_RS08115at 48.654 kb on - strand, within HMPREF1058_RS08115at 48.654 kb on - strand, within HMPREF1058_RS08115at 48.655 kb on + strand, within HMPREF1058_RS08115at 48.656 kb on - strand, within HMPREF1058_RS08115at 48.664 kb on + strand, within HMPREF1058_RS08115at 48.665 kb on - strand, within HMPREF1058_RS08115at 49.036 kb on + strand, within HMPREF1058_RS08115at 49.169 kb on - strand, within HMPREF1058_RS08115at 49.285 kb on + strand, within HMPREF1058_RS08115at 49.286 kb on - strand, within HMPREF1058_RS08115at 49.287 kb on + strand, within HMPREF1058_RS08115at 49.287 kb on + strand, within HMPREF1058_RS08115at 49.287 kb on + strand, within HMPREF1058_RS08115at 49.288 kb on - strand, within HMPREF1058_RS08115at 49.288 kb on - strand, within HMPREF1058_RS08115at 49.291 kb on + strand, within HMPREF1058_RS08115at 49.323 kb on + strand, within HMPREF1058_RS08115at 49.378 kb on - strand, within HMPREF1058_RS08115at 49.395 kb on - strand, within HMPREF1058_RS08115at 49.409 kb on + strandat 49.562 kb on + strandat 49.572 kb on - strandat 49.584 kb on + strandat 49.590 kb on - strandat 49.637 kb on + strandat 49.638 kb on - strandat 49.647 kb on - strandat 49.666 kb on - strandat 49.732 kb on - strandat 49.741 kb on - strandat 49.762 kb on + strandat 49.822 kb on - strandat 49.850 kb on + strandat 49.851 kb on - strandat 49.855 kb on + strandat 49.864 kb on + strandat 50.075 kb on - strand, within HMPREF1058_RS08110at 50.129 kb on - strand, within HMPREF1058_RS08110at 50.343 kb on + strand, within HMPREF1058_RS08110at 50.378 kb on - strand, within HMPREF1058_RS08110at 50.380 kb on + strand, within HMPREF1058_RS08110at 50.381 kb on - strand, within HMPREF1058_RS08110at 50.382 kb on + strand, within HMPREF1058_RS08110at 50.393 kb on - strand, within HMPREF1058_RS08110at 50.393 kb on - strand, within HMPREF1058_RS08110

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4
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46,716 - HMPREF1058_RS08120 0.70 +0.4
46,724 - HMPREF1058_RS08120 0.70 -0.6
46,754 + HMPREF1058_RS08120 0.71 -1.6
46,755 - HMPREF1058_RS08120 0.71 -1.4
46,771 - HMPREF1058_RS08120 0.72 -0.1
46,774 + HMPREF1058_RS08120 0.72 -0.1
46,775 - HMPREF1058_RS08120 0.72 +0.9
46,922 - HMPREF1058_RS08120 0.78 +0.8
46,933 + HMPREF1058_RS08120 0.78 +1.0
46,934 - HMPREF1058_RS08120 0.78 -3.5
47,002 + HMPREF1058_RS08120 0.81 -1.6
47,003 - HMPREF1058_RS08120 0.81 -0.1
47,011 + HMPREF1058_RS08120 0.81 -1.1
47,038 + HMPREF1058_RS08120 0.82 +0.9
47,129 - HMPREF1058_RS08120 0.85 -1.6
47,292 + -2.1
47,301 + -1.1
47,333 + -0.3
47,366 - -0.3
47,395 - -0.3
47,395 - +0.5
47,395 - +1.3
47,395 - -2.1
47,396 + -3.9
47,409 - -1.2
47,429 + -0.3
47,496 - +5.5
47,583 + -2.1
47,584 - -1.0
47,633 - +0.9
47,674 - +1.3
47,678 + +0.3
47,719 + -3.1
47,806 - +0.0
47,806 - -1.9
47,820 - +0.7
47,875 + HMPREF1058_RS08115 0.11 -0.4
47,876 - HMPREF1058_RS08115 0.11 -0.5
47,914 - HMPREF1058_RS08115 0.13 +0.3
48,001 + HMPREF1058_RS08115 0.18 +1.1
48,001 + HMPREF1058_RS08115 0.18 +0.2
48,001 + HMPREF1058_RS08115 0.18 +0.8
48,002 - HMPREF1058_RS08115 0.18 -1.9
48,021 - HMPREF1058_RS08115 0.19 -1.5
48,039 - HMPREF1058_RS08115 0.20 -1.6
48,065 + HMPREF1058_RS08115 0.21 +1.6
48,176 + HMPREF1058_RS08115 0.27 -0.9
48,179 - HMPREF1058_RS08115 0.27 -1.0
48,380 - HMPREF1058_RS08115 0.37 -1.3
48,398 + HMPREF1058_RS08115 0.38 +0.3
48,445 + HMPREF1058_RS08115 0.41 -1.1
48,491 - HMPREF1058_RS08115 0.43 +1.4
48,572 - HMPREF1058_RS08115 0.47 -2.6
48,574 + HMPREF1058_RS08115 0.47 -1.6
48,623 - HMPREF1058_RS08115 0.50 -0.2
48,623 - HMPREF1058_RS08115 0.50 +2.1
48,629 + HMPREF1058_RS08115 0.50 -0.4
48,631 + HMPREF1058_RS08115 0.50 +1.8
48,632 - HMPREF1058_RS08115 0.50 -0.0
48,653 + HMPREF1058_RS08115 0.52 -3.2
48,653 + HMPREF1058_RS08115 0.52 -2.1
48,653 + HMPREF1058_RS08115 0.52 -0.4
48,654 - HMPREF1058_RS08115 0.52 -1.6
48,654 - HMPREF1058_RS08115 0.52 -1.0
48,655 + HMPREF1058_RS08115 0.52 +0.9
48,656 - HMPREF1058_RS08115 0.52 -0.1
48,664 + HMPREF1058_RS08115 0.52 -1.0
48,665 - HMPREF1058_RS08115 0.52 -2.3
49,036 + HMPREF1058_RS08115 0.71 -1.1
49,169 - HMPREF1058_RS08115 0.78 -0.1
49,285 + HMPREF1058_RS08115 0.84 +0.7
49,286 - HMPREF1058_RS08115 0.84 +0.9
49,287 + HMPREF1058_RS08115 0.84 -2.4
49,287 + HMPREF1058_RS08115 0.84 +1.3
49,287 + HMPREF1058_RS08115 0.84 -1.6
49,288 - HMPREF1058_RS08115 0.84 -1.3
49,288 - HMPREF1058_RS08115 0.84 +2.0
49,291 + HMPREF1058_RS08115 0.84 -1.6
49,323 + HMPREF1058_RS08115 0.86 -2.1
49,378 - HMPREF1058_RS08115 0.89 +1.1
49,395 - HMPREF1058_RS08115 0.90 -0.4
49,409 + -1.5
49,562 + -0.3
49,572 - -1.6
49,584 + -1.1
49,590 - -0.9
49,637 + -2.1
49,638 - -2.1
49,647 - -2.3
49,666 - -0.7
49,732 - -1.6
49,741 - -1.6
49,762 + +1.0
49,822 - -1.7
49,850 + +0.6
49,851 - -1.6
49,855 + -3.1
49,864 + +2.8
50,075 - HMPREF1058_RS08110 0.20 -1.1
50,129 - HMPREF1058_RS08110 0.23 -0.5
50,343 + HMPREF1058_RS08110 0.36 +0.4
50,378 - HMPREF1058_RS08110 0.38 -1.6
50,380 + HMPREF1058_RS08110 0.38 +1.2
50,381 - HMPREF1058_RS08110 0.39 -1.5
50,382 + HMPREF1058_RS08110 0.39 -1.5
50,393 - HMPREF1058_RS08110 0.39 -3.2
50,393 - HMPREF1058_RS08110 0.39 -0.6

Or see this region's nucleotide sequence