Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05210

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS05220 and HMPREF1058_RS05215 are separated by 393 nucleotidesHMPREF1058_RS05215 and HMPREF1058_RS05210 are separated by 16 nucleotidesHMPREF1058_RS05210 and HMPREF1058_RS05205 are separated by 42 nucleotides HMPREF1058_RS05220: HMPREF1058_RS05220 - Hsp20/alpha crystallin family protein, at 214,102 to 214,539 _RS05220 HMPREF1058_RS05215: HMPREF1058_RS05215 - GtrA family protein, at 214,933 to 215,322 _RS05215 HMPREF1058_RS05210: HMPREF1058_RS05210 - SDR family oxidoreductase, at 215,339 to 216,214 _RS05210 HMPREF1058_RS05205: HMPREF1058_RS05205 - GNAT family N-acetyltransferase, at 216,257 to 217,198 _RS05205 Position (kb) 215 216 217Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 214.367 kb on - strand, within HMPREF1058_RS05220at 214.558 kb on + strandat 214.576 kb on - strandat 214.580 kb on + strandat 214.580 kb on + strandat 214.587 kb on - strandat 214.612 kb on - strandat 214.613 kb on + strandat 214.613 kb on + strandat 214.629 kb on - strandat 214.629 kb on - strandat 214.739 kb on - strandat 214.786 kb on + strandat 214.857 kb on + strandat 214.857 kb on + strandat 214.858 kb on - strandat 214.858 kb on - strandat 214.946 kb on + strandat 214.970 kb on + strandat 214.970 kb on + strandat 214.979 kb on + strand, within HMPREF1058_RS05215at 214.984 kb on + strand, within HMPREF1058_RS05215at 214.989 kb on + strand, within HMPREF1058_RS05215at 215.023 kb on + strand, within HMPREF1058_RS05215at 215.044 kb on + strand, within HMPREF1058_RS05215at 215.046 kb on + strand, within HMPREF1058_RS05215at 215.047 kb on - strand, within HMPREF1058_RS05215at 215.048 kb on + strand, within HMPREF1058_RS05215at 215.049 kb on - strand, within HMPREF1058_RS05215at 215.049 kb on - strand, within HMPREF1058_RS05215at 215.059 kb on - strand, within HMPREF1058_RS05215at 215.068 kb on + strand, within HMPREF1058_RS05215at 215.156 kb on + strand, within HMPREF1058_RS05215at 215.157 kb on - strand, within HMPREF1058_RS05215at 215.157 kb on - strand, within HMPREF1058_RS05215at 215.169 kb on + strand, within HMPREF1058_RS05215at 215.195 kb on + strand, within HMPREF1058_RS05215at 215.195 kb on + strand, within HMPREF1058_RS05215at 215.222 kb on + strand, within HMPREF1058_RS05215at 215.222 kb on + strand, within HMPREF1058_RS05215at 215.259 kb on + strand, within HMPREF1058_RS05215at 215.268 kb on - strand, within HMPREF1058_RS05215at 215.305 kb on - strandat 215.352 kb on - strandat 215.375 kb on + strandat 215.559 kb on - strand, within HMPREF1058_RS05210at 215.598 kb on + strand, within HMPREF1058_RS05210at 215.832 kb on + strand, within HMPREF1058_RS05210at 215.876 kb on - strand, within HMPREF1058_RS05210at 215.951 kb on + strand, within HMPREF1058_RS05210at 216.235 kb on + strandat 216.249 kb on - strandat 216.264 kb on + strandat 216.315 kb on - strandat 216.350 kb on + strandat 216.356 kb on - strand, within HMPREF1058_RS05205at 216.356 kb on - strand, within HMPREF1058_RS05205at 216.380 kb on + strand, within HMPREF1058_RS05205at 216.406 kb on + strand, within HMPREF1058_RS05205at 216.407 kb on - strand, within HMPREF1058_RS05205at 216.407 kb on - strand, within HMPREF1058_RS05205at 216.407 kb on - strand, within HMPREF1058_RS05205at 216.412 kb on - strand, within HMPREF1058_RS05205at 216.480 kb on + strand, within HMPREF1058_RS05205at 216.532 kb on - strand, within HMPREF1058_RS05205at 216.556 kb on - strand, within HMPREF1058_RS05205at 216.584 kb on + strand, within HMPREF1058_RS05205at 216.584 kb on + strand, within HMPREF1058_RS05205at 216.585 kb on - strand, within HMPREF1058_RS05205at 216.676 kb on - strand, within HMPREF1058_RS05205at 216.760 kb on - strand, within HMPREF1058_RS05205at 216.826 kb on - strand, within HMPREF1058_RS05205at 216.830 kb on - strand, within HMPREF1058_RS05205at 216.859 kb on + strand, within HMPREF1058_RS05205at 216.860 kb on - strand, within HMPREF1058_RS05205at 216.889 kb on + strand, within HMPREF1058_RS05205at 216.890 kb on - strand, within HMPREF1058_RS05205at 216.892 kb on - strand, within HMPREF1058_RS05205at 216.892 kb on - strand, within HMPREF1058_RS05205at 216.940 kb on - strand, within HMPREF1058_RS05205at 216.979 kb on + strand, within HMPREF1058_RS05205at 216.980 kb on - strand, within HMPREF1058_RS05205at 216.980 kb on - strand, within HMPREF1058_RS05205at 216.980 kb on - strand, within HMPREF1058_RS05205at 217.026 kb on + strand, within HMPREF1058_RS05205at 217.191 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4
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214,367 - HMPREF1058_RS05220 0.61 -1.6
214,558 + -1.4
214,576 - -4.0
214,580 + +0.2
214,580 + -0.6
214,587 - -2.4
214,612 - +0.8
214,613 + -1.0
214,613 + +3.5
214,629 - +1.2
214,629 - -0.7
214,739 - +1.3
214,786 + +1.1
214,857 + -3.4
214,857 + -1.0
214,858 - -0.6
214,858 - -2.6
214,946 + -3.5
214,970 + -3.7
214,970 + -2.7
214,979 + HMPREF1058_RS05215 0.12 +1.0
214,984 + HMPREF1058_RS05215 0.13 -0.0
214,989 + HMPREF1058_RS05215 0.14 -0.3
215,023 + HMPREF1058_RS05215 0.23 -2.0
215,044 + HMPREF1058_RS05215 0.28 -1.9
215,046 + HMPREF1058_RS05215 0.29 +1.3
215,047 - HMPREF1058_RS05215 0.29 -1.0
215,048 + HMPREF1058_RS05215 0.29 +0.4
215,049 - HMPREF1058_RS05215 0.30 -0.7
215,049 - HMPREF1058_RS05215 0.30 -0.8
215,059 - HMPREF1058_RS05215 0.32 +0.5
215,068 + HMPREF1058_RS05215 0.35 +1.2
215,156 + HMPREF1058_RS05215 0.57 +0.1
215,157 - HMPREF1058_RS05215 0.57 +1.2
215,157 - HMPREF1058_RS05215 0.57 +1.5
215,169 + HMPREF1058_RS05215 0.61 +1.2
215,195 + HMPREF1058_RS05215 0.67 +1.7
215,195 + HMPREF1058_RS05215 0.67 -2.6
215,222 + HMPREF1058_RS05215 0.74 -0.0
215,222 + HMPREF1058_RS05215 0.74 -2.3
215,259 + HMPREF1058_RS05215 0.84 -0.0
215,268 - HMPREF1058_RS05215 0.86 -0.0
215,305 - +0.6
215,352 - -1.4
215,375 + +0.7
215,559 - HMPREF1058_RS05210 0.25 -0.5
215,598 + HMPREF1058_RS05210 0.30 +1.5
215,832 + HMPREF1058_RS05210 0.56 +3.0
215,876 - HMPREF1058_RS05210 0.61 -1.0
215,951 + HMPREF1058_RS05210 0.70 +0.5
216,235 + +0.7
216,249 - -1.0
216,264 + +1.1
216,315 - +3.5
216,350 + -0.0
216,356 - HMPREF1058_RS05205 0.11 -0.9
216,356 - HMPREF1058_RS05205 0.11 -0.0
216,380 + HMPREF1058_RS05205 0.13 -3.5
216,406 + HMPREF1058_RS05205 0.16 -1.3
216,407 - HMPREF1058_RS05205 0.16 -0.6
216,407 - HMPREF1058_RS05205 0.16 -3.4
216,407 - HMPREF1058_RS05205 0.16 -1.0
216,412 - HMPREF1058_RS05205 0.16 -1.5
216,480 + HMPREF1058_RS05205 0.24 +0.1
216,532 - HMPREF1058_RS05205 0.29 -2.4
216,556 - HMPREF1058_RS05205 0.32 -0.9
216,584 + HMPREF1058_RS05205 0.35 +0.3
216,584 + HMPREF1058_RS05205 0.35 +0.9
216,585 - HMPREF1058_RS05205 0.35 +1.0
216,676 - HMPREF1058_RS05205 0.44 -2.4
216,760 - HMPREF1058_RS05205 0.53 -2.4
216,826 - HMPREF1058_RS05205 0.60 +0.4
216,830 - HMPREF1058_RS05205 0.61 -0.2
216,859 + HMPREF1058_RS05205 0.64 +1.3
216,860 - HMPREF1058_RS05205 0.64 -2.6
216,889 + HMPREF1058_RS05205 0.67 -0.8
216,890 - HMPREF1058_RS05205 0.67 -3.1
216,892 - HMPREF1058_RS05205 0.67 +1.7
216,892 - HMPREF1058_RS05205 0.67 +0.4
216,940 - HMPREF1058_RS05205 0.73 +1.2
216,979 + HMPREF1058_RS05205 0.77 -1.6
216,980 - HMPREF1058_RS05205 0.77 -2.0
216,980 - HMPREF1058_RS05205 0.77 +0.2
216,980 - HMPREF1058_RS05205 0.77 +0.6
217,026 + HMPREF1058_RS05205 0.82 -0.2
217,191 + -1.0

Or see this region's nucleotide sequence