Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00695 and HMPREF1058_RS00690 are separated by 173 nucleotides HMPREF1058_RS00690 and HMPREF1058_RS00685 are separated by 80 nucleotides
HMPREF1058_RS00695: HMPREF1058_RS00695 - MFS transporter, at 11,732 to 13,120
_RS00695
HMPREF1058_RS00690: HMPREF1058_RS00690 - DUF3332 domain-containing protein, at 13,294 to 13,845
_RS00690
HMPREF1058_RS00685: HMPREF1058_RS00685 - DUF4934 domain-containing protein, at 13,926 to 15,158
_RS00685
Position (kb) 13
14 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 12.294 kb on + strand, within HMPREF1058_RS00695 at 12.383 kb on - strand, within HMPREF1058_RS00695 at 12.392 kb on - strand, within HMPREF1058_RS00695 at 12.457 kb on - strand, within HMPREF1058_RS00695 at 12.461 kb on - strand, within HMPREF1058_RS00695 at 12.476 kb on + strand, within HMPREF1058_RS00695 at 12.487 kb on + strand, within HMPREF1058_RS00695 at 12.500 kb on - strand, within HMPREF1058_RS00695 at 12.529 kb on + strand, within HMPREF1058_RS00695 at 12.726 kb on - strand, within HMPREF1058_RS00695 at 12.727 kb on + strand, within HMPREF1058_RS00695 at 12.728 kb on - strand, within HMPREF1058_RS00695 at 12.728 kb on - strand, within HMPREF1058_RS00695 at 12.797 kb on - strand, within HMPREF1058_RS00695 at 12.800 kb on - strand, within HMPREF1058_RS00695 at 12.805 kb on + strand, within HMPREF1058_RS00695 at 12.805 kb on + strand, within HMPREF1058_RS00695 at 12.806 kb on - strand, within HMPREF1058_RS00695 at 12.905 kb on - strand, within HMPREF1058_RS00695 at 12.946 kb on + strand, within HMPREF1058_RS00695 at 12.957 kb on + strand, within HMPREF1058_RS00695 at 12.958 kb on - strand, within HMPREF1058_RS00695 at 13.014 kb on - strand at 13.275 kb on - strand at 13.500 kb on - strand, within HMPREF1058_RS00690 at 13.582 kb on + strand, within HMPREF1058_RS00690 at 13.611 kb on + strand, within HMPREF1058_RS00690 at 13.612 kb on - strand, within HMPREF1058_RS00690 at 13.612 kb on - strand, within HMPREF1058_RS00690 at 13.671 kb on + strand, within HMPREF1058_RS00690 at 13.809 kb on - strand at 13.919 kb on + strand at 13.920 kb on - strand at 13.922 kb on + strand at 13.923 kb on - strand at 13.923 kb on - strand at 13.961 kb on - strand at 13.964 kb on - strand at 14.079 kb on + strand, within HMPREF1058_RS00685 at 14.125 kb on - strand, within HMPREF1058_RS00685 at 14.163 kb on - strand, within HMPREF1058_RS00685 at 14.206 kb on - strand, within HMPREF1058_RS00685 at 14.321 kb on - strand, within HMPREF1058_RS00685 at 14.339 kb on + strand, within HMPREF1058_RS00685 at 14.356 kb on + strand, within HMPREF1058_RS00685 at 14.357 kb on - strand, within HMPREF1058_RS00685 at 14.362 kb on + strand, within HMPREF1058_RS00685 at 14.462 kb on - strand, within HMPREF1058_RS00685 at 14.466 kb on + strand, within HMPREF1058_RS00685 at 14.546 kb on - strand, within HMPREF1058_RS00685 at 14.561 kb on - strand, within HMPREF1058_RS00685 at 14.561 kb on - strand, within HMPREF1058_RS00685 at 14.561 kb on - strand, within HMPREF1058_RS00685 at 14.680 kb on + strand, within HMPREF1058_RS00685 at 14.713 kb on - strand, within HMPREF1058_RS00685 at 14.814 kb on + strand, within HMPREF1058_RS00685 at 14.814 kb on + strand, within HMPREF1058_RS00685 at 14.815 kb on - strand, within HMPREF1058_RS00685 at 14.815 kb on - strand, within HMPREF1058_RS00685 at 14.831 kb on + strand, within HMPREF1058_RS00685
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 remove 12,294 + HMPREF1058_RS00695 0.40 +0.9 12,383 - HMPREF1058_RS00695 0.47 -3.4 12,392 - HMPREF1058_RS00695 0.48 -4.8 12,457 - HMPREF1058_RS00695 0.52 +1.0 12,461 - HMPREF1058_RS00695 0.52 +0.5 12,476 + HMPREF1058_RS00695 0.54 +2.2 12,487 + HMPREF1058_RS00695 0.54 +0.9 12,500 - HMPREF1058_RS00695 0.55 +1.6 12,529 + HMPREF1058_RS00695 0.57 +1.1 12,726 - HMPREF1058_RS00695 0.72 -0.5 12,727 + HMPREF1058_RS00695 0.72 +0.0 12,728 - HMPREF1058_RS00695 0.72 -0.9 12,728 - HMPREF1058_RS00695 0.72 -2.4 12,797 - HMPREF1058_RS00695 0.77 -2.1 12,800 - HMPREF1058_RS00695 0.77 +1.5 12,805 + HMPREF1058_RS00695 0.77 +1.5 12,805 + HMPREF1058_RS00695 0.77 +1.0 12,806 - HMPREF1058_RS00695 0.77 +1.1 12,905 - HMPREF1058_RS00695 0.84 -1.8 12,946 + HMPREF1058_RS00695 0.87 -1.7 12,957 + HMPREF1058_RS00695 0.88 +3.2 12,958 - HMPREF1058_RS00695 0.88 -1.7 13,014 - -2.1 13,275 - -1.8 13,500 - HMPREF1058_RS00690 0.37 +1.0 13,582 + HMPREF1058_RS00690 0.52 +1.3 13,611 + HMPREF1058_RS00690 0.57 -0.8 13,612 - HMPREF1058_RS00690 0.58 -0.7 13,612 - HMPREF1058_RS00690 0.58 +0.3 13,671 + HMPREF1058_RS00690 0.68 +1.0 13,809 - -2.9 13,919 + +0.2 13,920 - +1.0 13,922 + -2.9 13,923 - -1.1 13,923 - +1.8 13,961 - +0.9 13,964 - -0.1 14,079 + HMPREF1058_RS00685 0.12 +0.5 14,125 - HMPREF1058_RS00685 0.16 +1.3 14,163 - HMPREF1058_RS00685 0.19 +0.9 14,206 - HMPREF1058_RS00685 0.23 -0.9 14,321 - HMPREF1058_RS00685 0.32 -0.4 14,339 + HMPREF1058_RS00685 0.33 +0.5 14,356 + HMPREF1058_RS00685 0.35 +2.4 14,357 - HMPREF1058_RS00685 0.35 +0.0 14,362 + HMPREF1058_RS00685 0.35 -0.1 14,462 - HMPREF1058_RS00685 0.43 -0.4 14,466 + HMPREF1058_RS00685 0.44 +0.9 14,546 - HMPREF1058_RS00685 0.50 +0.6 14,561 - HMPREF1058_RS00685 0.52 +2.7 14,561 - HMPREF1058_RS00685 0.52 +0.8 14,561 - HMPREF1058_RS00685 0.52 -4.0 14,680 + HMPREF1058_RS00685 0.61 +0.3 14,713 - HMPREF1058_RS00685 0.64 -0.7 14,814 + HMPREF1058_RS00685 0.72 -0.1 14,814 + HMPREF1058_RS00685 0.72 +2.8 14,815 - HMPREF1058_RS00685 0.72 -1.4 14,815 - HMPREF1058_RS00685 0.72 -0.9 14,831 + HMPREF1058_RS00685 0.73 +1.7
Or see this region's nucleotide sequence