Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00130 and HMPREF1058_RS00125 are separated by 16 nucleotides HMPREF1058_RS00125 and HMPREF1058_RS00120 are separated by 15 nucleotides HMPREF1058_RS00120 and HMPREF1058_RS00115 overlap by 4 nucleotides
HMPREF1058_RS00130: HMPREF1058_RS00130 - glycosyl hydrolase family 2, at 50,672 to 53,434
_RS00130
HMPREF1058_RS00125: HMPREF1058_RS00125 - glycoside hydrolase family 28 protein, at 53,451 to 54,875
_RS00125
HMPREF1058_RS00120: HMPREF1058_RS00120 - hypothetical protein, at 54,891 to 55,694
_RS00120
HMPREF1058_RS00115: HMPREF1058_RS00115 - DUF4450 domain-containing protein, at 55,691 to 56,389
_RS00115
Position (kb) 53
54
55 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 52.586 kb on + strand, within HMPREF1058_RS00130 at 52.674 kb on - strand, within HMPREF1058_RS00130 at 52.674 kb on - strand, within HMPREF1058_RS00130 at 52.674 kb on - strand, within HMPREF1058_RS00130 at 52.727 kb on - strand, within HMPREF1058_RS00130 at 52.791 kb on + strand, within HMPREF1058_RS00130 at 52.792 kb on - strand, within HMPREF1058_RS00130 at 52.842 kb on - strand, within HMPREF1058_RS00130 at 52.843 kb on + strand, within HMPREF1058_RS00130 at 52.843 kb on + strand at 52.843 kb on + strand, within HMPREF1058_RS00130 at 52.845 kb on + strand, within HMPREF1058_RS00130 at 52.845 kb on + strand, within HMPREF1058_RS00130 at 52.846 kb on - strand, within HMPREF1058_RS00130 at 52.846 kb on - strand, within HMPREF1058_RS00130 at 52.847 kb on + strand, within HMPREF1058_RS00130 at 52.847 kb on + strand, within HMPREF1058_RS00130 at 52.848 kb on - strand, within HMPREF1058_RS00130 at 52.890 kb on - strand, within HMPREF1058_RS00130 at 52.946 kb on - strand, within HMPREF1058_RS00130 at 52.947 kb on + strand, within HMPREF1058_RS00130 at 52.948 kb on - strand, within HMPREF1058_RS00130 at 52.964 kb on + strand, within HMPREF1058_RS00130 at 53.009 kb on + strand, within HMPREF1058_RS00130 at 53.041 kb on - strand, within HMPREF1058_RS00130 at 53.041 kb on - strand, within HMPREF1058_RS00130 at 53.054 kb on - strand, within HMPREF1058_RS00130 at 53.077 kb on + strand, within HMPREF1058_RS00130 at 53.122 kb on + strand, within HMPREF1058_RS00130 at 53.123 kb on - strand, within HMPREF1058_RS00130 at 53.141 kb on - strand, within HMPREF1058_RS00130 at 53.174 kb on - strand at 53.232 kb on + strand at 53.237 kb on - strand at 53.290 kb on - strand at 53.498 kb on - strand at 53.565 kb on + strand at 53.565 kb on + strand at 53.693 kb on + strand, within HMPREF1058_RS00125 at 53.710 kb on + strand, within HMPREF1058_RS00125 at 53.711 kb on - strand, within HMPREF1058_RS00125 at 53.715 kb on - strand, within HMPREF1058_RS00125 at 53.933 kb on + strand, within HMPREF1058_RS00125 at 54.009 kb on + strand, within HMPREF1058_RS00125 at 54.159 kb on + strand, within HMPREF1058_RS00125 at 54.273 kb on + strand, within HMPREF1058_RS00125 at 54.307 kb on - strand, within HMPREF1058_RS00125 at 54.331 kb on - strand, within HMPREF1058_RS00125 at 54.524 kb on + strand, within HMPREF1058_RS00125 at 54.524 kb on + strand, within HMPREF1058_RS00125 at 54.646 kb on - strand, within HMPREF1058_RS00125 at 54.648 kb on - strand, within HMPREF1058_RS00125 at 54.649 kb on + strand, within HMPREF1058_RS00125 at 54.650 kb on - strand, within HMPREF1058_RS00125 at 54.657 kb on + strand, within HMPREF1058_RS00125 at 54.657 kb on + strand, within HMPREF1058_RS00125 at 54.657 kb on + strand, within HMPREF1058_RS00125 at 54.658 kb on - strand, within HMPREF1058_RS00125 at 54.660 kb on - strand, within HMPREF1058_RS00125 at 54.660 kb on - strand, within HMPREF1058_RS00125 at 54.682 kb on + strand, within HMPREF1058_RS00125 at 54.709 kb on + strand, within HMPREF1058_RS00125 at 54.710 kb on - strand, within HMPREF1058_RS00125 at 54.777 kb on - strand at 54.850 kb on - strand at 54.862 kb on - strand at 54.862 kb on - strand at 54.892 kb on + strand at 54.892 kb on + strand at 54.907 kb on - strand at 54.907 kb on - strand at 54.921 kb on + strand at 54.940 kb on + strand at 54.941 kb on - strand at 54.941 kb on - strand at 54.948 kb on - strand at 54.948 kb on - strand at 55.063 kb on - strand, within HMPREF1058_RS00120 at 55.106 kb on - strand, within HMPREF1058_RS00120 at 55.151 kb on - strand, within HMPREF1058_RS00120 at 55.212 kb on - strand, within HMPREF1058_RS00120 at 55.547 kb on + strand, within HMPREF1058_RS00120 at 55.548 kb on - strand, within HMPREF1058_RS00120 at 55.548 kb on - strand, within HMPREF1058_RS00120 at 55.591 kb on - strand, within HMPREF1058_RS00120 at 55.676 kb on - strand at 55.747 kb on + strand at 55.806 kb on - strand, within HMPREF1058_RS00115 at 55.873 kb on + strand, within HMPREF1058_RS00115
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 remove 52,586 + HMPREF1058_RS00130 0.69 -1.2 52,674 - HMPREF1058_RS00130 0.72 -1.7 52,674 - HMPREF1058_RS00130 0.72 -1.0 52,674 - HMPREF1058_RS00130 0.72 +2.4 52,727 - HMPREF1058_RS00130 0.74 +0.9 52,791 + HMPREF1058_RS00130 0.77 -0.7 52,792 - HMPREF1058_RS00130 0.77 +1.1 52,842 - HMPREF1058_RS00130 0.79 -2.5 52,843 + HMPREF1058_RS00130 0.79 -0.3 52,843 + -1.2 52,843 + HMPREF1058_RS00130 0.79 +1.9 52,845 + HMPREF1058_RS00130 0.79 +0.4 52,845 + HMPREF1058_RS00130 0.79 -1.0 52,846 - HMPREF1058_RS00130 0.79 -1.8 52,846 - HMPREF1058_RS00130 0.79 -0.3 52,847 + HMPREF1058_RS00130 0.79 -2.5 52,847 + HMPREF1058_RS00130 0.79 +0.1 52,848 - HMPREF1058_RS00130 0.79 -2.2 52,890 - HMPREF1058_RS00130 0.80 +0.8 52,946 - HMPREF1058_RS00130 0.82 -0.7 52,947 + HMPREF1058_RS00130 0.82 -1.2 52,948 - HMPREF1058_RS00130 0.82 +2.8 52,964 + HMPREF1058_RS00130 0.83 -2.8 53,009 + HMPREF1058_RS00130 0.85 +0.8 53,041 - HMPREF1058_RS00130 0.86 -2.5 53,041 - HMPREF1058_RS00130 0.86 +1.3 53,054 - HMPREF1058_RS00130 0.86 +0.6 53,077 + HMPREF1058_RS00130 0.87 -1.2 53,122 + HMPREF1058_RS00130 0.89 +1.9 53,123 - HMPREF1058_RS00130 0.89 -0.2 53,141 - HMPREF1058_RS00130 0.89 -2.2 53,174 - -1.8 53,232 + -1.3 53,237 - +1.7 53,290 - -2.3 53,498 - -0.2 53,565 + -0.2 53,565 + -0.6 53,693 + HMPREF1058_RS00125 0.17 -3.0 53,710 + HMPREF1058_RS00125 0.18 +4.4 53,711 - HMPREF1058_RS00125 0.18 -1.0 53,715 - HMPREF1058_RS00125 0.19 +0.6 53,933 + HMPREF1058_RS00125 0.34 -4.6 54,009 + HMPREF1058_RS00125 0.39 +2.2 54,159 + HMPREF1058_RS00125 0.50 +0.0 54,273 + HMPREF1058_RS00125 0.58 -1.2 54,307 - HMPREF1058_RS00125 0.60 +0.8 54,331 - HMPREF1058_RS00125 0.62 -2.9 54,524 + HMPREF1058_RS00125 0.75 +0.2 54,524 + HMPREF1058_RS00125 0.75 +0.5 54,646 - HMPREF1058_RS00125 0.84 +1.8 54,648 - HMPREF1058_RS00125 0.84 +1.5 54,649 + HMPREF1058_RS00125 0.84 -3.6 54,650 - HMPREF1058_RS00125 0.84 -0.1 54,657 + HMPREF1058_RS00125 0.85 -1.7 54,657 + HMPREF1058_RS00125 0.85 -3.2 54,657 + HMPREF1058_RS00125 0.85 -1.2 54,658 - HMPREF1058_RS00125 0.85 -0.2 54,660 - HMPREF1058_RS00125 0.85 -1.8 54,660 - HMPREF1058_RS00125 0.85 +0.1 54,682 + HMPREF1058_RS00125 0.86 -1.4 54,709 + HMPREF1058_RS00125 0.88 +1.0 54,710 - HMPREF1058_RS00125 0.88 +1.4 54,777 - +0.1 54,850 - +0.6 54,862 - +1.1 54,862 - -1.0 54,892 + +0.5 54,892 + +0.5 54,907 - -1.2 54,907 - -0.3 54,921 + -4.1 54,940 + -0.1 54,941 - +1.2 54,941 - +0.8 54,948 - +1.6 54,948 - +0.1 55,063 - HMPREF1058_RS00120 0.21 -0.6 55,106 - HMPREF1058_RS00120 0.27 -3.0 55,151 - HMPREF1058_RS00120 0.32 -2.5 55,212 - HMPREF1058_RS00120 0.40 +0.7 55,547 + HMPREF1058_RS00120 0.82 -0.5 55,548 - HMPREF1058_RS00120 0.82 -3.0 55,548 - HMPREF1058_RS00120 0.82 -0.8 55,591 - HMPREF1058_RS00120 0.87 +0.4 55,676 - -0.2 55,747 + +0.2 55,806 - HMPREF1058_RS00115 0.16 -1.8 55,873 + HMPREF1058_RS00115 0.26 +0.9
Or see this region's nucleotide sequence