Experiment: cholesterol 100uM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3918c and Rv3919c overlap by 4 nucleotides Rv3919c and Rv3920c are separated by 131 nucleotides Rv3920c and Rv3921c are separated by 71 nucleotides
Rv3918c: Rv3918c - Probable chromosome partitioning protein ParA, at 4,406,488 to 4,407,531
Rv3918c
Rv3919c: Rv3919c - Probable glucose-inhibited division protein B Gid, at 4,407,528 to 4,408,202
Rv3919c
Rv3920c: Rv3920c - Conserved protein similar to jag protein, at 4,408,334 to 4,408,897
Rv3920c
Rv3921c: Rv3921c - Probable conserved transmembrane protein, at 4,408,969 to 4,410,069
Rv3921c
Position (kb) 4408
4409 Strain fitness (log2 ratio) -1
0
1 at 4408.056 kb on + strand, within Rv3919c at 4408.071 kb on + strand, within Rv3919c at 4408.072 kb on - strand, within Rv3919c at 4408.077 kb on - strand, within Rv3919c at 4408.203 kb on + strand at 4408.203 kb on + strand at 4408.203 kb on + strand at 4408.204 kb on - strand at 4408.299 kb on + strand at 4408.300 kb on - strand at 4408.336 kb on - strand at 4408.553 kb on + strand, within Rv3920c at 4408.554 kb on - strand, within Rv3920c at 4408.554 kb on - strand, within Rv3920c
Per-strain Table
Position Strand Gene LocusTag Fraction cholesterol 100uM (C) remove 4,408,056 + Rv3919c 0.78 +0.5 4,408,071 + Rv3919c 0.80 +0.1 4,408,072 - Rv3919c 0.81 +0.9 4,408,077 - Rv3919c 0.81 +0.4 4,408,203 + -1.2 4,408,203 + -0.0 4,408,203 + -0.4 4,408,204 - -1.4 4,408,299 + -0.1 4,408,300 - +0.3 4,408,336 - +0.6 4,408,553 + Rv3920c 0.39 +0.9 4,408,554 - Rv3920c 0.39 -0.7 4,408,554 - Rv3920c 0.39 -1.2
Or see this region's nucleotide sequence