Experiment: cholesterol 100uM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0246 and Rv0247c overlap by 4 nucleotides Rv0247c and Rv0248c are separated by 0 nucleotides
Rv0246: Rv0246 - Probable conserved integral membrane protein, at 296,809 to 298,119
Rv0246
Rv0247c: Rv0247c - Probable succinate dehydrogenase [iron-sulfur subunit] (succinic dehydrogenase), at 298,116 to 298,862
Rv0247c
Rv0248c: Rv0248c - Probable succinate dehydrogenase [iron-sulfur subunit] (succinic dehydrogenase), at 298,863 to 300,803
Rv0248c
Position (kb) 298
299 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 297.155 kb on + strand, within Rv0246 at 297.155 kb on + strand, within Rv0246 at 297.231 kb on + strand, within Rv0246 at 297.268 kb on - strand, within Rv0246 at 297.268 kb on - strand, within Rv0246 at 297.362 kb on + strand, within Rv0246 at 297.362 kb on + strand, within Rv0246 at 297.362 kb on + strand, within Rv0246 at 297.363 kb on - strand, within Rv0246 at 297.363 kb on - strand, within Rv0246 at 297.390 kb on + strand, within Rv0246 at 297.391 kb on - strand, within Rv0246 at 297.404 kb on + strand, within Rv0246 at 297.473 kb on - strand, within Rv0246 at 297.473 kb on - strand, within Rv0246 at 297.473 kb on - strand, within Rv0246 at 297.517 kb on + strand, within Rv0246 at 297.534 kb on - strand, within Rv0246 at 297.534 kb on - strand, within Rv0246 at 297.746 kb on + strand, within Rv0246 at 297.747 kb on - strand, within Rv0246 at 297.815 kb on + strand, within Rv0246 at 298.105 kb on - strand at 298.146 kb on + strand at 298.253 kb on + strand, within Rv0247c at 299.230 kb on - strand, within Rv0248c at 299.240 kb on - strand, within Rv0248c at 299.327 kb on - strand, within Rv0248c at 299.327 kb on - strand, within Rv0248c at 299.464 kb on - strand, within Rv0248c at 299.467 kb on + strand, within Rv0248c at 299.638 kb on + strand, within Rv0248c
Per-strain Table
Position Strand Gene LocusTag Fraction cholesterol 100uM (C) remove 297,155 + Rv0246 0.26 +1.1 297,155 + Rv0246 0.26 +1.0 297,231 + Rv0246 0.32 +2.9 297,268 - Rv0246 0.35 -0.5 297,268 - Rv0246 0.35 -0.7 297,362 + Rv0246 0.42 -1.3 297,362 + Rv0246 0.42 +0.9 297,362 + Rv0246 0.42 -0.3 297,363 - Rv0246 0.42 -0.8 297,363 - Rv0246 0.42 +0.5 297,390 + Rv0246 0.44 -0.5 297,391 - Rv0246 0.44 +0.3 297,404 + Rv0246 0.45 +1.2 297,473 - Rv0246 0.51 -1.8 297,473 - Rv0246 0.51 -0.2 297,473 - Rv0246 0.51 -0.6 297,517 + Rv0246 0.54 -0.5 297,534 - Rv0246 0.55 -0.1 297,534 - Rv0246 0.55 +0.9 297,746 + Rv0246 0.71 -0.9 297,747 - Rv0246 0.72 -0.0 297,815 + Rv0246 0.77 -0.5 298,105 - +0.3 298,146 + -0.1 298,253 + Rv0247c 0.18 -1.0 299,230 - Rv0248c 0.19 -0.9 299,240 - Rv0248c 0.19 -1.7 299,327 - Rv0248c 0.24 -3.0 299,327 - Rv0248c 0.24 -0.9 299,464 - Rv0248c 0.31 -4.2 299,467 + Rv0248c 0.31 -0.2 299,638 + Rv0248c 0.40 -1.3
Or see this region's nucleotide sequence